Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00154 ATGAAGCCCTTTACTGTCATGTTACCTGCATTCTGGTCTATATGCCTTCACATACTTGTGCTACTTTTTATTTTGAGCTCACTCTCGTTTGGCCCAAACTCAACTGCCTCTTTTGATTTCGGAAACGAGACTGACCATTTGGCGTTGCTGAAATTGAAGGAATCAATATCCAATGACCCATTTGGAGTGTTGGTCTCTTGGAATGCTTCTATCCATTTCTGTGAGTGGCATGGAATCACATGCATGCACCAAAGAGTAACAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTTATCTCCTCACATTGGCAATCTTTCCTTTCTAACAAACCTCAACCTTAGGAACAACAGTTTCTATGGAAAAATCCCACCAGAATTGGGTCGGTTGTTACAATTGCAGCAACTTGCTCTCACCAATAACTCCTTCACAGGGGAGATTCCTACAGACTTGACAAGTTGTTCTGATCTTGAAATCTTATTCTTAACGGGAAATAATCTGACTGGCAAAATACCAATTGAGATTGGCTCTCTTCAGAAGCTTCAATCATTGGCAGTTGGGAAAAATAATTTAATTGGAGGATTCCCGCCATTTATAGGGAATCTCTCATCACTTACTACTCTCTCGGTGCCTTATAATAACTTGGAGGGAGATATTCCAAAAGAAATATGCAGACTCAAAAACTTGACATGGATAGCAGTGGATATGAACATACTATCTGGTACATTTCCTTCTTGCCTTTACAATATGTCATCTCTTATTGTGATCTCAGCTGCACGAAATTACTTTGATGGCATTCTTCCACCCAACATGTTCAACACCCTCCCCAATCTCCAATTCTTTTCAATTTCCGGGAATCAATTCTCAGGTCCAATCCCCACTTCCATGGTGAATGTGTCTACCCTTACACAACTTGATATCGGTCGAAATAATTTTGTCGGACGAGTTCCAAGTCTAGAGAAGCTACAAGATCTTCAGTTGTTAAATTTGGAACTTAATTATCTAGGTGGAAATTCAACTAAGGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGTAAGTTACTAAAGATCTCTATATCCTATAATAATTTTGGAGGTAGTTTACCGAATTCTGTGAGCAATCTTTCCACTCAACTCAATTACCTATATCTTGGAGGTAACCACATATCTGGAAAAATTCCTGCGGAATTAGGAAATTTAATTAGCCTAACATGGTTGAGCATGGAAAATAACCACTTTCAAGGGATTATCCCAGCTACTTTCGGGAAGTATATAAAGATGCAAAAGCTAAACTTGGGTGGAAACAAACTTTCAGGAAATATACCAGCCTTCATAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCAAAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTATCAAAGGTTACAATACCTCAACCTCTCACAAAACAACCTTAGAGGAACCATACCCTCTGAGGTTTTTAGCCTTTCCTCATTAACAAATTTACTAGACTTGTCACAAAACTCTTTGAGTGGAACTCTCCTTAGTGAAGTGGACATGTTAACAAACATTGATTGGCTGGATCTCTCTGAGAATCATCTGTCTGGAAACATTCCTGGAACTATTGGACAATGCATGAGATTGGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGAATCATGCCATCCTCCTTGGCTTCACTCAAAGGACTTCAACGTGTAGACCTATCACGAAACAGCTTGTCTGGATCAATTCCCAAAGGTTTCCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTATAACAAGTTGAATGGTGAGGTACCAACAGAAGGTGTCTTTCAAAATGCAAACAAGTTAGGAGTGGCTGGAAACAATAAGCTTTGTGGAGGTATTCCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGATATGAAACATGCAAAACACCATAAGTTGATGGCAGTGATAGTTAGTGTGGTTGCTTTTCTTTTCATATTATCCCTTGTTCTAACTATCTACTGGATGAGGACAAGAAACAAGAAACCATCTTCTGATGAATCAACAATTGGTCAGTTGTCTAAGGTCTCATACCAAGACCTATATCATGGAACCGATGGGTTCTCGGCTGAAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTCTACAAAGGAAATCTTATGTCAGAAGATGATGTTGTTTCCGTAAAGGTGTTGAACCTTCAAAGGAAAGGAGCTCACAAGAGTTTCATTACTGAATGCAATGCACTTAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTCTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCAAGGACAGGAGGTGAAGAGCATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGCTTCTGCATTACATTATCTTCATCTTGAATGTGAGCAAATGGTCCTTCATTGTGATCTGAAGCCAAGCAATATCCTACTTGATGATGACATGGTTGCTCATGTGAGTGACTTTGGTATAGCAAGACTTGTCTCAACCATTGACGGTATCTCTCAGAAGCAAACTAGTACAGTTGGAATAAAAGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAGTAGGTTCTGAAGTGTCCACACATGGTGACATGTATAGCTTCGGGATTCTTGTGTTGGAAATGCTTACCGGAAGAAGACCAACCGATGAAGTGTTTGAAGATGGTCAAAATCTGCATAAGTTTGTTGAGATTTCATTTCCTGATAATCTTTTACAGATTTTGGACCCATCTCTTTTACCAAGAGATCTAGAAGCAGCAAGAGAAGAAGAAATTAGTGGGGATCTAATTTTAACTGTAAAGAAGTTCTTAGTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAGTATAGTGGATGTCATTAGAGAGTTAAACAAAATCAGAAACGCCTTTCTCAATGGTGTTCAGACAAGTGAGTAA 3081 0.3833 MKPFTVMLPAFWSICLHILVLLFILSSLSFGPNSTASFDFGNETDHLALLKLKESISNDPFGVLVSWNASIHFCEWHGITCMHQRVTELNLQGYQLHGSLSPHIGNLSFLTNLNLRNNSFYGKIPPELGRLLQLQQLALTNNSFTGEIPTDLTSCSDLEILFLTGNNLTGKIPIEIGSLQKLQSLAVGKNNLIGGFPPFIGNLSSLTTLSVPYNNLEGDIPKEICRLKNLTWIAVDMNILSGTFPSCLYNMSSLIVISAARNYFDGILPPNMFNTLPNLQFFSISGNQFSGPIPTSMVNVSTLTQLDIGRNNFVGRVPSLEKLQDLQLLNLELNYLGGNSTKDLEFLKSLTNCSKLLKISISYNNFGGSLPNSVSNLSTQLNYLYLGGNHISGKIPAELGNLISLTWLSMENNHFQGIIPATFGKYIKMQKLNLGGNKLSGNIPAFIGNLSQLFYLDLSKNMLEGNIPPSIGNYQRLQYLNLSQNNLRGTIPSEVFSLSSLTNLLDLSQNSLSGTLLSEVDMLTNIDWLDLSENHLSGNIPGTIGQCMRLEYLYLQGNSFHGIMPSSLASLKGLQRVDLSRNSLSGSIPKGFQNISFLEYLNVSYNKLNGEVPTEGVFQNANKLGVAGNNKLCGGIPELHLPPCPVKDMKHAKHHKLMAVIVSVVAFLFILSLVLTIYWMRTRNKKPSSDESTIGQLSKVSYQDLYHGTDGFSAENLIGSGSFGSVYKGNLMSEDDVVSVKVLNLQRKGAHKSFITECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVLEYMKNGSLEQWLHPRTGGEEHPRTLDLDQRLNIIMDVASALHYLHLECEQMVLHCDLKPSNILLDDDMVAHVSDFGIARLVSTIDGISQKQTSTVGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILVLEMLTGRRPTDEVFEDGQNLHKFVEISFPDNLLQILDPSLLPRDLEAAREEEISGDLILTVKKFLVSLFRIGLACSVESPRERMSIVDVIRELNKIRNAFLNGVQTSE 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00154 1026 Gene3D Phosphorylase Kinase; domain 1 675 793 - -
Sebi50g00154 1026 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 80 345 - -
Sebi50g00154 1026 Gene3D Transferase(Phosphotransferase) domain 1 794 1023 - -
Sebi50g00154 1026 Pfam Leucine rich repeat 404 463 IPR001611 GO:0005515
Sebi50g00154 1026 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Sebi50g00154 1026 Pfam Protein kinase domain 714 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00154 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Sebi50g00154 1026 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1024 - -
Sebi50g00154 1026 ProSiteProfiles Protein kinase domain profile. 712 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00154 1026 CDD STKc_IRAK 718 1014 - -
Sebi50g00154 1026 SMART serkin_6 712 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00154 1026 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 793 - -
Sebi50g00154 1026 Gene3D Ribonuclease Inhibitor 44 153 IPR032675 -
Sebi50g00154 1026 SUPERFAMILY Protein kinase-like (PK-like) 685 1011 IPR011009 -
Sebi50g00154 1026 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 348 1012 - -
Sebi50g00154 1026 FunFam LRR receptor-like serine/threonine-protein kinase EFR 346 650 - -
Sebi50g00154 1026 SMART LRR_typ_2 107 131 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 523 547 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 402 425 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 450 474 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 203 227 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 475 498 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 595 620 IPR003591 -
Sebi50g00154 1026 SMART LRR_typ_2 571 594 IPR003591 -
Sebi50g00154 1026 Gene3D Ribonuclease Inhibitor 249 645 IPR032675 -
Sebi50g00154 1026 SUPERFAMILY L domain-like 379 634 - -
Sebi50g00154 1026 Gene3D Ribonuclease Inhibitor 154 247 IPR032675 -
Sebi50g00154 1026 SUPERFAMILY L domain-like 42 336 - -
Sebi50g00154 1026 Pfam Leucine rich repeat N-terminal domain 43 81 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00154 Sebi-Chr50 2380433 2383790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00154 40 1025 Receptor kinase-like Gene Family AT3G47570 46.454 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi50g00154 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00154 - - gmx:100801459 1370.53