Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00150 ATGCACCAAAGAGTAATAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTTATCTCCTCACGTTGGCAATCTTTCCTTTCTGACAAACCTTAATCTCAAAAACAACAGTTTCTACGGAAAAATCCCACAAGAATTGGGTCGGTTGTTACAATTGCAGCAACTCTCTCTCACCAATAACTCCTTCACAGGGGAGATTCCAACAAACTTGACAAGTTGCTCTCATCTCAGAGACTTATATTTAGAAGGGAATAATCTGATTGGCAAAATACCAATTGAGATTGGCTCTCTTTGGAAGCTTCAATCATTGGCAGTTGGGAAAAATAATTTAACTGGAGGATTCCCTCCATTTATAGGGAATCTTTCATCCCTCATCCGTGTCTCGGTGTCTTATAATAACTTAGAGGGAGATATTCAACAACAAATATGTCGCCTCAAAAACCTGGCAATGATAGTAGTGGAAGTGAACAAACTATCTGGTACATTTCCTTTTTGCCTTTACAATATGTCATCTCTTATCGTGATCTCAGCTGCAGGAAATTACTTTGATGGCACTCTTCCACCCAACATGTTCAACACCCTTCCTAATCTCCAATTTTTTGCAATTGGTAGGAATCAATTCTCAGGTCCAATCCCCACTTCCGTTTCAAATGTGTCTACCCTTACACTACTTGATATCGTTGTAAACCATTTTGTTGGAAACGTTCCAAGTCTAGGGAGGCTACAAGATCTTCAGTGGCTAAATCTGGGTAGAAACAATCTAGGTGACAATTCAATGAAGGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTAAGTTGCAAATGTTAGATATATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCATGGGTAATCTCTCCACCCAACTCAACCGACTATATGTTGGGGGCAATCATTTATCAGGAAAAATTCCTGCGGAATTAGGAAATCTAATCAACTTAACTCTTTTGACAATGGAAAGTAACCATTTTGAAGGGTTGATTCCAACTACCTTTTGGATGCTTCAGAAGATGCAAGTTTTAGACTTGGGTGGAAACCAACTATCAGGAGTGATACCGACCTTTATAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCACAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGTCAAAGGTTACAATACCTCAACCTTTCACAAAACAACCTTAGAGGAACCATACCCTCTGAGGTTTTTAGCCTTTCCTCATTAACAAATTTACTGGACTTGTCACAAAACTCTTTGAGTGGCACTCTCCCTAGTGAAGTGGGCTTGTTAACAAACATCGATTGGCTGGATCTCTCTGAGAACCATCTGTCTGGAAACATTCCTGGAACCATTGGACAATGCATGAGATTGGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGTATCATGCCATCCTCCTTGGCTTCACTCAAAGGACTTCAACGTGTAGACCTATCACGAAACAGCTTGTCTGGATCAATTCCCAAAGGTTTCCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTATAACAAGTTGAATGGTGAGGTACCAACAGAAGGTCTCTTTCAAAATGCAAGCAAGTTAGGAGTGGCCGGAAACAATAAGCTTTGTGGAGGTATTCCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGATATGAAACATGCAAAACACCATAAGTTGATGGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATATTATCCCTTGTTCTAACTATCTACTGGATGAGGACAAGAAACAAGAAACCATCTTCTGATGAATCAACAATTGGTCAGTTGTCTAAGGTCTCATACCAAGACCTATATCATGGAACCGATGGGTTCTCGGCTGAAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTCTACAAAGGAAATCTTATGTCAGAAGATGATGTTGTTGCCGTAAAGGTGTTGAACCTTCAAAGGAAAGGAGCTCACAAGAGTTTCATTATTGAATGCAATGCGCTTAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGCCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGTTGCACCCAAGGACAGGAGGTGAAGAACATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGCTTCTGCATTAAATTATCTTCATCTTGAATGTGAGCAATTGGTCCTTCATTGTGATTTGAAGCCAAGCAATATCCTACTTGATGATGACATGGTTGCTCATGTGAGTGACTTTGGCATAGCAAGACTTGTCACAACCATTGATGGTACCTCCCACAATCAAACTAGTACAATTGGAATAAAAGGGACTGTTGGCTATGCTCCCCCAGAGTATGGAGTAGGTTCTGAAGTGTCCACACATGGTGACATGTATAGCTTCGGGATTCTTGTGTTAGAAATGCTTACTGGAAGAAGACCAACCGATGAAATGTTTGAAGATGGTCAAAATCTGCATAAGTTTGTTGAGATTTCATTTCCTGATAATCTTTTACAGATTTTGGACCCACCTCTTGTACCAACAGATGAAGAATCAACAAGAGAAGAAGAAATTAGTGGGAATCTCATTTTAACTGTAAAGAAGTGCTTTGTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAATATAGTGGATGTCATTAGAGATCTAAACAAAATCAGAAAGGCCTTTCTCAATGGTGAGTTTTGA 2829 0.3846 MHQRVIELNLQGYQLHGSLSPHVGNLSFLTNLNLKNNSFYGKIPQELGRLLQLQQLSLTNNSFTGEIPTNLTSCSHLRDLYLEGNNLIGKIPIEIGSLWKLQSLAVGKNNLTGGFPPFIGNLSSLIRVSVSYNNLEGDIQQQICRLKNLAMIVVEVNKLSGTFPFCLYNMSSLIVISAAGNYFDGTLPPNMFNTLPNLQFFAIGRNQFSGPIPTSVSNVSTLTLLDIVVNHFVGNVPSLGRLQDLQWLNLGRNNLGDNSMKDLEFLKSLTNCSKLQMLDISYNNFGGSLPNSMGNLSTQLNRLYVGGNHLSGKIPAELGNLINLTLLTMESNHFEGLIPTTFWMLQKMQVLDLGGNQLSGVIPTFIGNLSQLFYLDLSQNMLEGNIPPSIGNCQRLQYLNLSQNNLRGTIPSEVFSLSSLTNLLDLSQNSLSGTLPSEVGLLTNIDWLDLSENHLSGNIPGTIGQCMRLEYLYLQGNSFHGIMPSSLASLKGLQRVDLSRNSLSGSIPKGFQNISFLEYLNVSYNKLNGEVPTEGLFQNASKLGVAGNNKLCGGIPELHLPPCPVKDMKHAKHHKLMAVIVSVVAFLLILSLVLTIYWMRTRNKKPSSDESTIGQLSKVSYQDLYHGTDGFSAENLIGSGSFGSVYKGNLMSEDDVVAVKVLNLQRKGAHKSFIIECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLEQWLHPRTGGEEHPRTLDLDQRLNIIMDVASALNYLHLECEQLVLHCDLKPSNILLDDDMVAHVSDFGIARLVTTIDGTSHNQTSTIGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILVLEMLTGRRPTDEMFEDGQNLHKFVEISFPDNLLQILDPPLVPTDEESTREEEISGNLILTVKKCFVSLFRIGLACSVESPRERMNIVDVIRDLNKIRKAFLNGEF 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00150 942 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 713 941 - -
Sebi50g00150 942 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Sebi50g00150 942 Pfam Leucine rich repeat 468 527 IPR001611 GO:0005515
Sebi50g00150 942 SUPERFAMILY L domain-like 298 553 - -
Sebi50g00150 942 SMART serkin_6 631 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00150 942 SUPERFAMILY Protein kinase-like (PK-like) 604 930 IPR011009 -
Sebi50g00150 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 264 569 - -
Sebi50g00150 942 Gene3D Phosphorylase Kinase; domain 1 594 712 - -
Sebi50g00150 942 ProSiteProfiles Protein kinase domain profile. 631 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00150 942 Gene3D Ribonuclease Inhibitor 258 564 IPR032675 -
Sebi50g00150 942 Gene3D Ribonuclease Inhibitor 1 256 IPR032675 -
Sebi50g00150 942 Gene3D Transferase(Phosphotransferase) domain 1 713 939 - -
Sebi50g00150 942 SMART LRR_typ_2 394 417 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 442 466 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 490 513 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 369 393 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 50 74 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 321 344 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 345 368 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 514 539 IPR003591 -
Sebi50g00150 942 SMART LRR_typ_2 242 267 IPR003591 -
Sebi50g00150 942 Pfam Protein kinase domain 633 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00150 942 SUPERFAMILY L domain-like 3 255 - -
Sebi50g00150 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 602 712 - -
Sebi50g00150 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Sebi50g00150 942 PANTHER LEUCINE RICH REPEAT KINASE 2 267 934 - -
Sebi50g00150 942 ProSitePatterns Protein kinases ATP-binding region signature. 637 660 IPR017441 GO:0005524
Sebi50g00150 942 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00150 Sebi-Chr50 2327396 2330348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00150 2 940 Receptor kinase-like Gene Family AT3G47570 46.534 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi50g00150 Pkinase 8.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00150 - - gmx:100801459 1328.15