Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00144 ATGGATGATTTGCTTTATGAAACAGTATGGGAACTCAAACTATGCAGTGATAGATATGGAGTGCGCAAAAAGGATGAGGCTACCAGGGCTAAAGAAATTGCTGAGAGGAAGTTTATTGCAAAGGATACTTTGAGTACAAAGAAGTTTGCTTTGAAAGCCCAAAATTTATTTCCTGCCCTTGAGGGTATTCCTCAAATGATATCAACCCTTGATGTGTATATTTCTGCTGAGAATAAAATAAATGGAGAAGCAGATTGGTATGGTATACTTGGTGTGGACCCCCTCGCCGATGATGATACAGTGAGGAAACAATACAGGAAGCTAGCTCTCATGCTTCACCCTGACAAGAACAAGTCCATTGGAGCTGATGGGGCCTTTAAACTTATTTCAGAGGCATGGAGTTTACTATCAGATAAGGCTAAAAGGGAAGCTTATGATGAGAAGAGAAATGGAAAAGCACGTAAAGGTTCAACTCTATTTGGAGGTTCAACAAAAACAGGGGCTAATGGCAGTTACAATTTTACTAAGACTGCCCCTTCAAGTGCAAGGACTCCAAAGAACACTACTGCTAAGGAAAACACTTCATCTTCTACACATAAGTCAAAACCTACATTTTGGACTGCTTGCCATAATTGCAAAATGCAGTATGAGTATCTCAGAGTTTATCTTAACCTTAAACTTTTGTGTCCCAACTGCCATCAGAATCAGCAAAAGTTCAGTCGCCAAGTACCTAATAAAAGCAAGTCTAATGTTGGAAAGAACAATATGGCAGCTCCAAATGTTAAAGGAGGGTCTTATAGTAAAACTGAATCCTATAACAAAACCAATTTCCAGTGGGCTCCATTCTCAAAAACTTCTGGTGTTTCTAATGTGGCTCAAGCTGCAAATGTGGTTCAGCAGGCATATGATAAGCTTGAGCATACTATAACCATTGATGATGCAGACGAGCTCCGGGTTGGGGTCGTTGATCTTCTCTGA 978 0.4018 MDDLLYETVWELKLCSDRYGVRKKDEATRAKEIAERKFIAKDTLSTKKFALKAQNLFPALEGIPQMISTLDVYISAENKINGEADWYGILGVDPLADDDTVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKAKREAYDEKRNGKARKGSTLFGGSTKTGANGSYNFTKTAPSSARTPKNTTAKENTSSSTHKSKPTFWTACHNCKMQYEYLRVYLNLKLLCPNCHQNQQKFSRQVPNKSKSNVGKNNMAAPNVKGGSYSKTESYNKTNFQWAPFSKTSGVSNVAQAANVVQQAYDKLEHTITIDDADELRVGVVDLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00144 325 CDD DnaJ 85 138 IPR001623 -
Sebi50g00144 325 PRINTS DnaJ domain signature 121 141 IPR001623 -
Sebi50g00144 325 PRINTS DnaJ domain signature 87 105 IPR001623 -
Sebi50g00144 325 PRINTS DnaJ domain signature 141 160 IPR001623 -
Sebi50g00144 325 PRINTS DnaJ domain signature 105 120 IPR001623 -
Sebi50g00144 325 MobiDBLite consensus disorder prediction 144 201 - -
Sebi50g00144 325 Coils Coil 325 325 - -
Sebi50g00144 325 SUPERFAMILY Chaperone J-domain 77 145 IPR036869 -
Sebi50g00144 325 ProSiteProfiles dnaJ domain profile. 85 149 IPR001623 -
Sebi50g00144 325 ProSitePatterns Nt-dnaJ domain signature. 126 145 IPR018253 -
Sebi50g00144 325 MobiDBLite consensus disorder prediction 157 201 - -
Sebi50g00144 325 Pfam DnaJ domain 85 146 IPR001623 -
Sebi50g00144 325 SMART dnaj_3 84 141 IPR001623 -
Sebi50g00144 325 PANTHER BNAC03G44070D PROTEIN 23 252 - -
Sebi50g00144 325 MobiDBLite consensus disorder prediction 240 267 - -
Sebi50g00144 325 Gene3D DnaJ domain 82 201 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00144 Sebi-Chr50 2228374 2229515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00144 24 234 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.484 1.99e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00144 - - gmx:100816712 422.55