Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00133 ATGGAGAGCAACGAGGTACTGGAGGAGCTTCTCAACATCGAGGTTGAGATTAAAGATGTCCAAGATCAAATAAGTGCCTTAATTGACAGGCAAGAGAAGTTGTATGAGAGAAAATCTGAGCTGAGTGCTATTCTGGAAGCGTGTAAAGAATCTGAAAACCAGGCCAATAATGTGGCTCCAAGCACTGTGGAAAATTGGACTGGGCCATTTGAATGGGATTCTGAAGCAGACGATATTAGGTTGAATATTTTTGGCATTTCATCTTACCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGGAGAGATGTTTTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCGTTAATTCAAGATCAGGTGATGGGCTTGACTGCTTTGGGCATCCCAGCATATATGTTAACTTCGACAACAAGTAAGGATGATGAGAAATTTATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTGACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAGAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGATTTTCGACCTGATTACAAAAACCTTGGCATTCTCAAGACTCAGTTCCCTAATGTTCCAATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCGTATTCCTAGATGTGTCAAATTTGTCAGCACTGTCAACAGGCCAAACTTGTTTTATATGGTAAAAGAAAAGTCATCTGTCAGTAAGGTAGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAAAGAATCAGGGATTGTTTATTGCTTCTCGAGGAAGGAATGTGAACAGGTTGCAAAGGATTTAAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTCCAGGTCATAGTTGGTACTGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTCGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGCGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTATTATATTTCAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTCTTCTACGAAAATTCGGGACTGCAGAATCTCTATGACATAGTTCGATATTGTCAGTCCAAAAGACAGTGCCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTACAAGAGTGCAATGGGATGTGTGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCCCGTCATGCAAAACTGATGGTCTCCTTGTTGCAAGATATACAAGCAAACGATCAGAGGGCAACAATGTTGCAATTATTCGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGACTTAAAACGAGAGGAAATTGAGCAGCTCATCTTACAACTTTTACTGGAGCGTGCTTTGAAAGAAGAATTTCAGCATACACCATATGCTACAAATGCTTACATTGCTGTAGGGCCGTTGGCCAAGCAAATATTGCAAGGAAAGAAGACTGTGAAGCTTGAGATTTACACTGAAGAGAGAACTAAAGCTGGCGTAAGACCAGTGAAACGCCGCCTTGGATCCTCTGGTTTGGAGCTCAAGCTTGATGAGCTAAGAAAAGAATTGTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTCAACAAATCAGCTTATTATGTTCTCAAAAACCAAACTCACTGGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAGAAGTATGGAAATAGAATACTTGAGCAAATTGAAAAATATTCTGATTTCAAAGCGACTGATGAACAAGTAAGTGATGGTAGAGCCTCAAAGAGATCGAAGACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATGA 2109 0.412 MESNEVLEELLNIEVEIKDVQDQISALIDRQEKLYERKSELSAILEACKESENQANNVAPSTVENWTGPFEWDSEADDIRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKDDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLRIPRCVKFVSTVNRPNLFYMVKEKSSVSKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKDLRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDIQANDQRATMLQLFDKMKIKQKELGSDLKREEIEQLILQLLLERALKEEFQHTPYATNAYIAVGPLAKQILQGKKTVKLEIYTEERTKAGVRPVKRRLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPNSLEQLEKVIGKLKTEKYGNRILEQIEKYSDFKATDEQVSDGRASKRSKTKKNLVLIESSEDEA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00133 702 FunFam ATP-dependent DNA helicase 480 580 - -
Sebi50g00133 702 FunFam ATP-dependent DNA helicase 280 476 - -
Sebi50g00133 702 MobiDBLite consensus disorder prediction 675 702 - -
Sebi50g00133 702 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Sebi50g00133 702 CDD SF2_C_RecQ 280 416 - -
Sebi50g00133 702 Coils Coil 3 37 - -
Sebi50g00133 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Sebi50g00133 702 SMART ultradead3 85 288 IPR014001 -
Sebi50g00133 702 Pfam RecQ zinc-binding 419 475 IPR032284 -
Sebi50g00133 702 FunFam ATP-dependent DNA helicase 46 279 - -
Sebi50g00133 702 CDD DEXHc_RecQ1 71 279 - -
Sebi50g00133 702 NCBIfam RecQ family ATP-dependent DNA helicase 82 505 IPR004589 GO:0004386|GO:0006310
Sebi50g00133 702 Pfam Helicase conserved C-terminal domain 302 406 IPR001650 -
Sebi50g00133 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Sebi50g00133 702 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 658 - -
Sebi50g00133 702 SMART helicmild6 326 407 IPR001650 -
Sebi50g00133 702 Gene3D - 280 476 IPR027417 -
Sebi50g00133 702 FunFam ATP-dependent DNA helicase 599 669 - -
Sebi50g00133 702 Gene3D HRDC domain 599 669 IPR044876 -
Sebi50g00133 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Sebi50g00133 702 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Sebi50g00133 702 Gene3D - 480 580 IPR036388 -
Sebi50g00133 702 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sebi50g00133 702 SUPERFAMILY HRDC-like 604 669 IPR010997 GO:0000166|GO:0044237
Sebi50g00133 702 Gene3D - 46 279 IPR027417 -
Sebi50g00133 702 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Sebi50g00133 702 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00133 Sebi-Chr50 2064367 2075035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00133 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 19.944 9.44e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00133 K10899 - gmx:100817635 1200.65