Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00122 ATGGGCTACGATTCGGATAGCCCCTCTCAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTGGGGTTCATGTTTGGGAATGTTGATAATTCTGGTGATCTGGACGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCACTGGCTGACAAGCTGGGTTCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACAACCTGACGTTGTTGAACAAGACTGTGGTGAAAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCTGAGACTGAAACTGCCAATGAAGAGGAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAGTCTGACAAGGAACAAGACTTAGTGAATAACGATTCCAAAGTTGATAACACCTCATTAGCTGGTGTGCAGGAAGAGAGTTTTGTAGGTGCATCTAAAGTAGAGAGCGCTCTCGAGCATGATTTACAAGCAGGCTCACTACAGAGTGAAGAATTGGACACTGATGCACAAAAACTTGAGGAGGAAGGGCCTGAAGTTTTGAAGAAGTCCACGGCTGCACCATTGCCTGTTTTGTATGTGGAAGATGGGATGGCGGTTTGCGCTTCTCTGAAATCTTTGGTATTCATGAACCTCTTAGAAAGGGAGAAAAGAGAGAGCATCGACATTCTACTCCTGGAGAATCTTTTGAGATTTTTTGTGGGAGATAGATACAAGTCTTTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGGATTCCTCAAAGGATTTAGTCAGAGTCTCTCGCTTACTAAACAAGTTTGTGTAGTCAGTAATGATGTATCAGAAAGCAACGATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCCTCAATGGCTTTGAAAGATGATCGGCTACCAAAGGACTCTTGTCTTTGTGCTGAACCAATGAAAGGGGATTTCACTGAAGATCTGCCCTGGAAAGATCATCCTCTTACGTGGGCGAACTTTTACCCTCTTGATCAGCGAGACTGGGAACATGAAATTCTTTGGGGAGATTCTCCTGTTGCAAGTGATAATAATGTTGAGAGCTGTGAAATTTCTGGACCAGAATTGGGAGCTTCTGGTGGTAGTGAAAGAGAAATTGAAAGTGGGATACAGAATCTTATGTTGGAGTCTAAGAAGATACTGGATGAGAAAGATCATACTGTCTTCATGTGCTGCTCTCCCGTCTCATTGGAACCCTTTGGCTCAAGGGATTCTTCTGGATCTAAAACCAATTTAATGTCCAAAAGTCTATTTCATCCCCAACTTCTGAGGCTAGAATCCAGATATGAAGTGGATGGTTCTAGTCTTGCGGATGGAAGAGAGGAAGATATATCTGAGAAGCATAAGCAAAGTGATCAAGTAAAGCGTTTTACCAAAGTTATGTCACAAAACAGAGACCTGATGGAGGGCTCATGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTACGATGAAACCAAAGCTTATATTTGATCTTCGGGATGATCAAATGCACTTTGAAGTTTTGGATAAGAAGGATGGTACACATCTTTGCCTTCATGCTGGGGCTATGATTTTAACTCATTCTTTAAAATCAGGCAGTGGGGACTCTTCTGAGCTACCTGGACATGGAGGTCAATATGGATGGCGATCTGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAACTGAAATCAAATTCAAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCGCTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCATCGGCCTAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATGAAGAGCTTGGGTGGCAAGGGGAGTAAATTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAACAGTGAAAATATTTTATTTAGGAAGGGAACTTGAAGATCACAAATCACTTGCTGCGCAAGATGTTCAACCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAATAAGTCTTTGCGCCCTCCAGGGGCGTTCAAGAAAAAGTCTGATCTGTCTGTGAAAGACGGACGTGTTTTTCTGATGGAGTAA 2316 0.4158 MGYDSDSPSQDGRDEDDDEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGSSLTDIDLSGKSPQTQPDVVEQDCGEKAEDAVDYEDIDEEYDGPETETANEEEASVFDDENYDEESDKEQDLVNNDSKVDNTSLAGVQEESFVGASKVESALEHDLQAGSLQSEELDTDAQKLEEEGPEVLKKSTAAPLPVLYVEDGMAVCASLKSLVFMNLLEREKRESIDILLLENLLRFFVGDRYKSLDLSDDIVEEDEEGFLKGFSQSLSLTKQVCVVSNDVSESNDVDLEFPKFGFLHGDASMALKDDRLPKDSCLCAEPMKGDFTEDLPWKDHPLTWANFYPLDQRDWEHEILWGDSPVASDNNVESCEISGPELGASGGSEREIESGIQNLMLESKKILDEKDHTVFMCCSPVSLEPFGSRDSSGSKTNLMSKSLFHPQLLRLESRYEVDGSSLADGREEDISEKHKQSDQVKRFTKVMSQNRDLMEGSWLDKIIWEELDQPTMKPKLIFDLRDDQMHFEVLDKKDGTHLCLHAGAMILTHSLKSGSGDSSELPGHGGQYGWRSVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKASETVKIFYLGRELEDHKSLAAQDVQPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGRVFLME 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00122 771 Gene3D - 640 730 - -
Sebi50g00122 771 ProSiteProfiles Ubiquitin domain profile. 658 728 IPR000626 GO:0005515
Sebi50g00122 771 CDD Ubl_TAFs_like 658 729 - -
Sebi50g00122 771 Pfam Ubiquitin family 662 730 IPR000626 GO:0005515
Sebi50g00122 771 SMART ubq_7 658 730 IPR000626 GO:0005515
Sebi50g00122 771 Coils Coil 171 191 - -
Sebi50g00122 771 Pfam TATA box-binding protein binding 18 65 IPR009067 -
Sebi50g00122 771 MobiDBLite consensus disorder prediction 70 84 - -
Sebi50g00122 771 MobiDBLite consensus disorder prediction 1 31 - -
Sebi50g00122 771 MobiDBLite consensus disorder prediction 93 135 - -
Sebi50g00122 771 MobiDBLite consensus disorder prediction 584 604 - -
Sebi50g00122 771 Pfam Protein of unknown function (DUF3591) 577 771 IPR022591 -
Sebi50g00122 771 Gene3D - 21 71 IPR036741 -
Sebi50g00122 771 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 771 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Sebi50g00122 771 FunFam Transcription initiation factor TFIID subunit 1 640 730 - -
Sebi50g00122 771 Coils Coil 769 771 - -
Sebi50g00122 771 MobiDBLite consensus disorder prediction 68 141 - -
Sebi50g00122 771 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Sebi50g00122 771 SUPERFAMILY Ubiquitin-like 628 728 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00122 658 728 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 2.09e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00122 K03125 - gmx:100780733 1202.96