Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00116 ATGGAGTCCAGTGAGAATGAAAGCGTGTCAGTTCGAGAGGTCCATGCAAATGGAAGCCGCGTAGTTACATCAGAAATTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTGCATTGCGAGAAGGGTTGTCACTCAATTTTGAGATGTTTGAGTTTTGCCCCACGGTTACTTTTAAAACTTCAACAGGAAGCAAGGGCTCTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGCTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCCTCCTTTTCTGACAAAGCACAAGTCAAGAAAGGCCGCACTCGCGCTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATATACAGAAGCTGCTAGTGATTGTAAAAGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTGGCTATGATGAGGCAATCTCAGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCGTTTGTTGTTTTCTTGCTGTACAGTGGGGTGGAAGCAAGTCCACCTAGCTTAGCAGTTCAGATTGAGGGGGCTTATGTGCCTAAAAATAATCTTGAAGAGGCAATTCTGCTCTTAATGATTCTTATAAGAAAGTTTTGCCTTGGTAAGGCGGAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAGCCAAACTTCTATTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCACCGTATTGATCGCTGGAATTCTTTAGCTTTGTGTCTTAGTGGAGCTGGACAAAATGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACATGAACGACCAGATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGGACCCGTATCTTGCTGCTGAGGGAGTAGGCCATGCACAAAAGGCAATCAGTAATGCTCATGGCCTGAAAGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTAGGAAAGCAAGCTAAGGTTGCATCTTCTGACTTTGAGAGGTCTCGCCTTCAGTCCAAAGCACTGGAATCATTGGAGGAGGCAATTAGATTGGAACGAAACAATTCTGATCTGATTTTTGAGTTGGCTGTTCAATATGCAGAGCATCGAAATTTGACTGCTGCTTTACGCTCTGTAAGGCATTTCTTTAATGAAACTGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAACAAAAATATCTGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGCTAAAGATCTCACAATCACGACCTATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAAAAGAAATCCTTTGGGTCTTTCCGAATGAGTTCGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGGAGTACTCTTCTGCGGTGTTTTGTTTGAAGGACGGGCAAAGTCAAGAAGCTCTTAATGCTGCTATTAATTCTGTCCTAATTGAACCAAACTATGTTCCAAGCAAGATCTTGATGGGTGCTTTGGTTCAGAAAATTGAACCAAAGGCATTGCCTGCTGCAAGAAGCATGCTGTCTGATGCACTTAGAGTAGAACCCACCAACCGCAAGGCTTGGTATTACTTGGGATTGGTTCACAAGCAAGATGGCCGAATGGCTGATGCTGCTGACTGCTTCCAAGCAGCTTACATGCTTGAAGAATCTGATCCCATTGAAAGTTTCAGCGCTATACTTTGA 2031 0.4343 MESSENESVSVREVHANGSRVVTSEIEAKLDEGNIQEAESALREGLSLNFEMFEFCPTVTFKTSTGSKGSLGKLEYQRGNVEAALRVFDGIDLQAAIQRLQPSFSDKAQVKKGRTRAESPSSVSQHAASLVLEAIYLKAKSLQKLGKYTEAASDCKSILDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKQAGGYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIEGAYVPKNNLEEAILLLMILIRKFCLGKAEWDPSVMEHLTFALSVCSQTSILAKQFEDLMPGVYHRIDRWNSLALCLSGAGQNDSALNLLRKSLHKHERPDDLTSLLLAARICSEDPYLAAEGVGHAQKAISNAHGLKEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEAIRLERNNSDLIFELAVQYAEHRNLTAALRSVRHFFNETGGSILKAWILLALILSAQQKYLEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFRMSSKDAEICLQKARELKEYSSAVFCLKDGQSQEALNAAINSVLIEPNYVPSKILMGALVQKIEPKALPAARSMLSDALRVEPTNRKAWYYLGLVHKQDGRMADAADCFQAAYMLEESDPIESFSAIL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00116 676 ProSiteProfiles TPR repeat profile. 634 667 IPR019734 GO:0005515
Sebi50g00116 676 PANTHER PROTEIN NPG1 5 548 IPR043376 -
Sebi50g00116 676 SUPERFAMILY TPR-like 417 660 IPR011990 GO:0005515
Sebi50g00116 676 Gene3D Tetratricopeptide repeat domain 300 465 IPR011990 GO:0005515
Sebi50g00116 676 Gene3D Tetratricopeptide repeat domain 19 220 IPR011990 GO:0005515
Sebi50g00116 676 SUPERFAMILY TPR-like 31 211 IPR011990 GO:0005515
Sebi50g00116 676 SUPERFAMILY TPR-like 132 457 IPR011990 GO:0005515
Sebi50g00116 676 Gene3D Tetratricopeptide repeat domain 478 674 IPR011990 GO:0005515
Sebi50g00116 676 Pfam Tetratricopeptide repeat 618 661 - -
Sebi50g00116 676 SMART tpr_5 316 349 IPR019734 GO:0005515
Sebi50g00116 676 SMART tpr_5 392 436 IPR019734 GO:0005515
Sebi50g00116 676 SMART tpr_5 472 505 IPR019734 GO:0005515
Sebi50g00116 676 SMART tpr_5 132 165 IPR019734 GO:0005515
Sebi50g00116 676 SMART tpr_5 634 667 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00116 Sebi-Chr50 1779853 1784623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00116 3 676 Calmodulin-binding Proteins AT2G43040 66.056 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00116 K21843 - gmx:100814609 1051.97