Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00105 ATGGCCGTGAATCTGACACACGGGGCGATCGAGACTATTTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTCGCAGCAGAACAGCACCGTCGAGAGGTACCGCCTTGTGCTCTCTGACGGTTCGTATTATTATCAGCAAGGGATGCTCGCCAGGCAGAAGAACGAGTTGGTCCGTTCTCGAAGTTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCGGTTCATCTGCAACGTTGTCCAGGGCCGCAAGAGTGAGCTTTTGTAA 291 0.5292 MAVNLTHGAIETICSDNFSSEELQPVLQVIDLKSQQNSTVERYRLVLSDGSYYYQQGMLARQKNELVRSRSLQKGSVVRLTRFICNVVQGRKSELL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00105 96 Pfam Replication factor-A protein 1, N-terminal domain 5 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi50g00105 96 Gene3D - 3 96 IPR012340 -
Sebi50g00105 96 CDD RPA1N 8 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi50g00105 96 FunFam Replication protein A subunit 4 95 - -
Sebi50g00105 96 SUPERFAMILY Nucleic acid-binding proteins 1 92 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00105 Sebi-Chr50 1699224 1699873 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00105 1 92 Core DNA Replication Machinery Family AT4G19130 51.042 1.28e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00105 K07466 - gmx:100812465 119.012