Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00101 ATGGCCGTGAATCTGACACAAGGGGCGATCGAGACTATGTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTTGGTGCAGTCGCAGCAGAACAGCGCCGCCGAGAGGTACCGTCTCATGGTCTCTGACGGTTCGTATTATCAGAAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTCCGTTCTCGAAGCTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTTCATCTCCAACGTTCTCCAGGGCCGCAGGATTATTATCATCGTCGACCTAGATGTTTTACTGGACAAATGTGACGTGATTGGAGAACCTGTTGCACTACAAGAAAATACATCTGCGGAATCTGCCACTGGTCAATCACGAATAACCTCTGGGAATTCACAGTCTTTAAATGGTAGTTCACATGCAAGTGGCATGGCTGCCAGACCAAATATGTCTAGGCCTTATCCGGATCATCCAAAAGTGAATCTCCCTTCTAATAGTGTTCATTCTAGCAGTTCTGACTCTGTAAGATATGGTGCTGCTAATGCTCCTTCTACTTATGGTAGTCCACCTGCAAGTGGCTTGACTGCTAGACCAAATATGTATGGGCCTTCTCCGGATCATCCAAAAATGAATCTTCCTTCTAACAGTGTTCACTCTGGCCGTCCTGACTCTGTAAGATATGATGCTTCTAATGCTCCTCTTACTTATCCTAAAGCAGAGCCTGGTGGCAGTTCGCCTAGATCAGCACCATTCAATGGGTCTTATGGTGATCAGAACACTGGTTTCCGCAATCCCCAGTATGAGGCTTTAAGGCCAATGCAAAATTCTTATGCCCGTCCACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGTCCTGTTGGAAGAAATGAAGCTCCCCTCAGGATACTTCCAATTGCTGCATTGAATCCATACCAGAATACGTGGGCGATCAAAGCCAGAGTAACGGCGAAGGCAGAACTCAGACACTATAATAATGCCCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTCTGGATTCTCATGGTGGCGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAATTTTATAATCTAATTGAAGTTGGTAAAATCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCTCAAAAGAATTTTAATCACCTCCGTAATGATCAAGAGATAACTCTTGATATTACTTCGATTATACAGCCGTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTTCTTTTTGTCCCATTAGCGAAATTGAAAGCATGGAAAACAACAGCATTTTGGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACAGCTTCAATTATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCCAGTTGAAAGATATGTCTGGCCGAAGCGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGACTGCAAACTATTTGCGATTCTGGGACATTTCCAGTTTTGGCTATAAAAGCTGCTAGAGTAAATGATTTCAATGGAAAATCTGTTGGGACCATAGCCTCCAGCCAGTTATTTGTAGAACCTGATTTTGCAGAGGCTTGTACACTCAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAACATCTAGTATTGGTAAAACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTATCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGCAACAAAAAGGTTACCAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATTCTGCAAATCCAGATACAAGATCACACTGGGGTAACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTCTACCTGCAAAAGATTTGTATTATCTGAAATTCGAAGAACAAGGTGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCAATAAATATGCGTTCAAGTTAAAAGTTAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTAAACTTTGCATCTGAATCTAGAATTCTGTTGGGTTTGATTGATAAACTGAAGTCTGAGGAAGCAGAAGGTGCCACTCCTAACTCTGTCATCAATAATACTGGACTGGGGAGCGTTGGATCTGGACAAGCTATGCCACCTATTTATAATCCTATAAAGAGCAACACTAATGCCAATAGAGATTATGGGATGCCGGCAAATCAAGTGGGTCAATATGGAAACCAATATAGCAGTTCTTTTGGTTCATCAGGGGCTCCTGGTTCATACATGTCATGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGTCCTATGCCCAAATACTACAAATCGACCTGGACAGTTTGCAGGAGGCTCCTATGGAAACAGGGTGTCTGCTGCATCAAGTGGTGCCTCTGGTGAATGCTTTAAGTGCCATCAAACTGGCCACTGGGCAAAAGACTGTCCTGGTATTAGTGCAGCACCCCCAGCGTATGGAAGCAGTAATGCAATGCAAGGAAGATATGGGGTTGCTCAAAGGCAACAATTTGGAGGATACTGA 2751 0.434 MAVNLTQGAIETMCSDNFSSEELQPVLQVIDLKLVQSQQNSAAERYRLMVSDGSYYQKGMLATQKNELVRSRSLQKGSVVRLTQFISNVLQGRRIIIIVDLDVLLDKCDVIGEPVALQENTSAESATGQSRITSGNSQSLNGSSHASGMAARPNMSRPYPDHPKVNLPSNSVHSSSSDSVRYGAANAPSTYGSPPASGLTARPNMYGPSPDHPKMNLPSNSVHSGRPDSVRYDASNAPLTYPKAEPGGSSPRSAPFNGSYGDQNTGFRNPQYEALRPMQNSYARPPQPMYRQPSPMYTNRGPVGRNEAPLRILPIAALNPYQNTWAIKARVTAKAELRHYNNARGDGKVFSFDLLDSHGGEIRATCFNAVADQFYNLIEVGKIYLVSRGSIKPAQKNFNHLRNDQEITLDITSIIQPCLDDDNSIPKQTFSFCPISEIESMENNSILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDSGTFPVLAIKAARVNDFNGKSVGTIASSQLFVEPDFAEACTLREWFDKEGKNVPTLSISRETSSIGKTDVRKTISQIKDEKLGTSEKPDWISICASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQIQIQDHTGVTWVTAFQEGGEEIMGLPAKDLYYLKFEEQGDEKFAEIIRKVLFNKYAFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRILLGLIDKLKSEEAEGATPNSVINNTGLGSVGSGQAMPPIYNPIKSNTNANRDYGMPANQVGQYGNQYSSSFGSSGAPGSYMSCNNCGGSGHSSVLCPNTTNRPGQFAGGSYGNRVSAASSGASGECFKCHQTGHWAKDCPGISAAPPAYGSSNAMQGRYGVAQRQQFGGY 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00101 916 MobiDBLite consensus disorder prediction 119 269 - -
Sebi50g00101 916 Pfam OB-fold nucleic acid binding domain 326 414 IPR004365 GO:0003676
Sebi50g00101 916 SUPERFAMILY Retrovirus zinc finger-like domains 820 887 IPR036875 GO:0003676|GO:0008270
Sebi50g00101 916 CDD RPA1_DBD_A 314 416 - -
Sebi50g00101 916 FunFam Replication protein A subunit 563 754 - -
Sebi50g00101 916 FunFam Replication protein A subunit 4 118 - -
Sebi50g00101 916 SUPERFAMILY Nucleic acid-binding proteins 312 425 IPR012340 -
Sebi50g00101 916 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Sebi50g00101 916 SUPERFAMILY Nucleic acid-binding proteins 577 754 IPR012340 -
Sebi50g00101 916 Gene3D - 794 891 - -
Sebi50g00101 916 NCBIfam replication factor-a protein 1 (rpa1) 288 753 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi50g00101 916 MobiDBLite consensus disorder prediction 281 303 - -
Sebi50g00101 916 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi50g00101 916 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi50g00101 916 FunFam Replication protein A subunit 311 421 - -
Sebi50g00101 916 Gene3D - 310 421 IPR012340 -
Sebi50g00101 916 MobiDBLite consensus disorder prediction 252 269 - -
Sebi50g00101 916 MobiDBLite consensus disorder prediction 119 150 - -
Sebi50g00101 916 Pfam Zinc knuckle 871 886 IPR001878 GO:0003676|GO:0008270
Sebi50g00101 916 Pfam Replication factor-A C terminal domain 596 746 IPR013955 -
Sebi50g00101 916 Gene3D - 3 119 IPR012340 -
Sebi50g00101 916 Gene3D - 563 754 IPR012340 -
Sebi50g00101 916 CDD RPA1_DBD_B 446 553 - -
Sebi50g00101 916 MobiDBLite consensus disorder prediction 167 197 - -
Sebi50g00101 916 SUPERFAMILY Retrovirus zinc finger-like domains 857 889 IPR036875 GO:0003676|GO:0008270
Sebi50g00101 916 SUPERFAMILY Nucleic acid-binding proteins 430 559 IPR012340 -
Sebi50g00101 916 Gene3D - 424 562 IPR012340 -
Sebi50g00101 916 CDD RPA1_DBD_C 580 753 IPR047192 -
Sebi50g00101 916 FunFam Replication protein A subunit 424 562 - -
Sebi50g00101 916 Pfam Replication protein A OB domain 435 538 IPR031657 -
Sebi50g00101 916 ProSiteProfiles Zinc finger CCHC-type profile. 872 886 IPR001878 GO:0003676|GO:0008270
Sebi50g00101 916 PANTHER REPLICATION FACTOR A 1, RFA1 325 737 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi50g00101 916 SMART c2hcfinal6 828 844 IPR001878 GO:0003676|GO:0008270
Sebi50g00101 916 SMART c2hcfinal6 871 887 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00101 Sebi-Chr50 1653071 1656424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00101 1 856 Core DNA Replication Machinery Family AT5G45400 52.338 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00101 K07466 - gmx:100778597 1228