Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00082 ATGGAGAGTGGTGGCAGAGAAGGCTATGATGGGGTGGTGATGACTATGACCAGAGACCCCAAACCAAGGCTGAGGTGGACAGCTGATCTTCATGATCGGTTTGTGGATGCTGTTACAAAGCTTGGTGGCCCTGATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTAGGAAACAAAATGAAGAGCAGCACAAAGAGAATAATAGATGTTCATATGTAAATTTCAGTAATCGTTCTTCAGGGCCTAATACCAGTTACAGAGATGATAATGAAGGGGGAGAAATCCCAATAGGAGAAGCATTGAGGCATCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGATCGAGGTGCAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTACAAGCAGTGTTAGAGAAAGCACAGAGGAGCCTTTCCCTAGGTGGGCCAGGCAGTCTTGAAGCATCAAGAGCTCAATTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATGGCAAAGAAAACATAATAGACATGAATGATTTTTATAATAAGTGCCATAGTAGCTCAGCTTTCAATTATCAAGAAGTAGGGAGAGAAGAAAATAAGGATCAAAAGCCTAAGGTTGAAGGGGATTCAGCACAATTTGACTTAAACATCAAAGGTAGCAATGACCTTGGAGCTGAAATGGAATCCAAGATGCTTTCATACAGGGATAACATGTTATGTGAAGCTATTGTTTATGCTCATTCCCCATTTTCTATCATTGCTTACACCATACTTGGAGCAACCAAGTTATATACAGAAACTGAGCAGGGAGATTTGAAGGAACATCTTCATGGAATTGAGTATGGGTAA 939 0.4058 MESGGREGYDGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEEQHKENNRCSYVNFSNRSSGPNTSYRDDNEGGEIPIGEALRHQIEVQKRLEEQIEVQKKLQMRIEAQGKYLQAVLEKAQRSLSLGGPGSLEASRAQLTEFNSALSNFMENMNKDGKENIIDMNDFYNKCHSSSAFNYQEVGREENKDQKPKVEGDSAQFDLNIKGSNDLGAEMESKMLSYRDNMLCEAIVYAHSPFSIIAYTILGATKLYTETEQGDLKEHLHGIEYG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00082 312 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Sebi50g00082 312 Coils Coil 131 151 - -
Sebi50g00082 312 MobiDBLite consensus disorder prediction 92 110 - -
Sebi50g00082 312 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Sebi50g00082 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Sebi50g00082 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Sebi50g00082 312 FunFam Myb family transcription factor 20 78 - -
Sebi50g00082 312 Gene3D - 20 78 - -
Sebi50g00082 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 228 IPR044848 GO:0003700
Sebi50g00082 312 MobiDBLite consensus disorder prediction 79 113 - -
Sebi50g00082 312 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00082 Sebi-Chr50 1333496 1335958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00082 12 190 G2-like Transcription Factor Family AT3G24120 52.941 1.50e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi50g00082 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00082 - - gmx:100810146 450.669