Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00078 ATGGCAGCTAACGTGAACTGCGACATGCCCCTCACTCACCCTCATTGGTACTCTCCTGAAACCGGAATTTACCATAGCATACACGCTCCCTTGGACCTTCCCACTGACCCTTTTCTCGACCTTGTTTCCTTCATTTTTTCTCACAGCCACAATGGGGTTTCCGCCCTTGTTGATTCCTCATCTGGGTGTTCCATTTCTTACTCAAAGTTGTTACCTTTGGTCAAATCCATGGCTTCTGGTCTCCACAGTATGGGTGTTTCACAAGGTGACGTCGTTTTGCTTTTACTTCCCAATTCCATTTACTATCCCATTGTCTTCTTGGGTGTTCTGTATCTAGGTGCTGTTGTTACACCATTGAATCCTCTCAGTAGTATCTATGAAATACGTAAGCAGATTACTGAATGTGGTGTGAGTTTGGCTTTTACTGCACCTGAAAATGTCAAGAAACTAGAACCATTGGGCATTCCTATTATTGCTGTGCCAGAAAATGAGAAGGGTTTGAAGGATGCTTGTTTCTCAGGGTTTTGTAACCTGATTTCTGGGACTACAGGGGTGAGCAAAGGAGTTGTTCTAACCCATAAAAATCTTATAGCTATGGTTGAGCTTTTTGTGAGATTTGAAGCTTCTCAATATGAATATTCTTGCTTGAAGAATGTGTTTCTAGCTGTTCTGCCAATGTTCCATATATATGGTTTATCACTCTTTGCCATGGGATTGCTGTCTCTGGGTTCCACAGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTATCACGGTGATTGATAAATATAAAGTTACACACTTTCCTGTTGTTCCACCAATGTTGACAGCATTGACAACAAGGGCAAAGTGTATTAATGGAAGTAAGTTGAAGAGTTTGATACAGGTCTCCTGTGGTGCTGCACCTTTGAGTGCAGGAGTAATTAATGACTTTGTCCAAACTTTCCCTAACATTGATTTTATACAGGGTTATGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGATTCAATACTGAAAAGTCTTGCAAATACTCTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGCAGACTGGAATAGTGGTGCATTTTTGCCCCCGGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGGCTTCAATTATGAGAGGATACTTGAATAATGAGGAAGCCACAATGTCAACAATTGATAAAGACGGTTGGCTACATACTGGAGATGTTGTTTATTTTGATCAGGATGGATATTTACATATATCTGACCGCTTGAAAGATATTATCAAATACAAGGGATTTCAGATTGCTCCTGCTGATTTAGAAGCTGTATTAATTTTGCATCCTGAAGTAGTTGATGTTGCTGTTACAGCTGCCATGGATGAAGAAGCTGGTGAGATACCAGTGGCATTTGTGGTCAAGAAGTTTGGAAGTGTACTTTCTCCAAAGCATATAATGGATTATGTTGCTGAGCAGGTTGCTCCATACAAGAAGGTTAGGAGGGTGATCTTCACTGATAGGATACCAAGGTCTGCGACTGGGAAGATCCTTCGAAAGCAACTGAGGAATTGCTTCACTTCTAAACTCTAA 1590 0.4145 MAANVNCDMPLTHPHWYSPETGIYHSIHAPLDLPTDPFLDLVSFIFSHSHNGVSALVDSSSGCSISYSKLLPLVKSMASGLHSMGVSQGDVVLLLLPNSIYYPIVFLGVLYLGAVVTPLNPLSSIYEIRKQITECGVSLAFTAPENVKKLEPLGIPIIAVPENEKGLKDACFSGFCNLISGTTGVSKGVVLTHKNLIAMVELFVRFEASQYEYSCLKNVFLAVLPMFHIYGLSLFAMGLLSLGSTVIVMRKFDIDEVITVIDKYKVTHFPVVPPMLTALTTRAKCINGSKLKSLIQVSCGAAPLSAGVINDFVQTFPNIDFIQGYGMTESTAVGTRGFNTEKSCKYSSIGLLAPNMEAKVADWNSGAFLPPGSSGELWLRGASIMRGYLNNEEATMSTIDKDGWLHTGDVVYFDQDGYLHISDRLKDIIKYKGFQIAPADLEAVLILHPEVVDVAVTAAMDEEAGEIPVAFVVKKFGSVLSPKHIMDYVAEQVAPYKKVRRVIFTDRIPRSATGKILRKQLRNCFTSKL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00078 529 CDD 4CL 33 521 - -
Sebi50g00078 529 Gene3D - 23 426 IPR042099 -
Sebi50g00078 529 Pfam AMP-binding enzyme 180 431 IPR000873 -
Sebi50g00078 529 Pfam AMP-binding enzyme 52 150 IPR000873 -
Sebi50g00078 529 FunFam 4-coumarate--CoA ligase 2 427 528 - -
Sebi50g00078 529 Pfam AMP-binding enzyme C-terminal domain 441 515 IPR025110 -
Sebi50g00078 529 SUPERFAMILY Acetyl-CoA synthetase-like 50 527 - -
Sebi50g00078 529 Gene3D - 427 527 IPR045851 -
Sebi50g00078 529 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00078 Sebi-Chr50 1305780 1309468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00078 14 529 Monolignol Biosynthesis Gene Families AT4G19010 59.225 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00078 K01904 - gmx:100804808 901.353