Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00077 ATGGCAGCTTGCACTGTCTACTCAACACAATCTCTCAGAACAAATTGCTCCATCTCAACCCCATCAAAAACACATGTAGGATTTCACCAAAAACAGGTTGTGTTCTACACCACAAGCAAGAGAATAAGCAGCAAGAGAGGCAGTAACAGATATGTGATAACATGTGCAGGAGGTGACTCACAGACAGTGGTGATTGGTCTAGCTGCTGACTCTGGTTGTGGGAAGAGTACCTTCATGAGAAGGCTAACAAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAAGGTGGAAATCCAGATTCCAACACACTCATCAGTGACACTACCACAGTCATATGTTTGGATGATTACCATTCATTGGATAGAACCGGTAGAAAGGAAAAGGGTGTCACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAAGCTCTTAAGGATGGAATTGCTGTTGAAAAGCCAATTTACAACCATGTTACTGGTCTCTTGGATCCACCAGAGGTTATTAAACCTCCTAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCTCGGGTAAGAGATCTCTTGGACTTCAGCATCTACCTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACATAGTCTTGAAAGCATCAAGGCTAGTATTGAAGCAAGGAAGCCTGATTTTGACGCCTATATTGATCCTCAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTCATTCCTGATGACAATGAGGGGAAGATTCTAAGAGTGAGGTTGATACAGAAAGAGGGGGTTAAGTTCTTTAGCCCAGTTTACTTATTTGATGAGGGTTCTACCATTTCCTGGATACCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAATTTTTCTATGGACCAGAGACTTACTTTGGAAATGAGGTGTCTGTTGTAGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGCCACCTAAGCAACCTGTCAACAAAGTTCTATGGAGAGGTTACTCAACAGATGTTGAAGCATGCTGACTTCCCTGGTAGCAGCAATGGAACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATTTGAGCAGATAGTAGCCAGCAGGGCTGAGGCTCCAGTAGGAGCAGCAAAAGCTTAG 1227 0.4279 MAACTVYSTQSLRTNCSISTPSKTHVGFHQKQVVFYTTSKRISSKRGSNRYVITCAGGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPEVIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYFGNEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSSNGTGLFQTIVGLKIRDLFEQIVASRAEAPVGAAKA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00077 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 333 IPR027417 -
Sebi50g00077 408 CDD PRK 64 353 - -
Sebi50g00077 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sebi50g00077 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sebi50g00077 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sebi50g00077 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sebi50g00077 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Sebi50g00077 408 Gene3D - 59 297 IPR027417 -
Sebi50g00077 408 PANTHER URIDINE KINASE 50 297 - -
Sebi50g00077 408 FunFam Phosphoribulokinase 59 289 - -
Sebi50g00077 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00077 116 290 PRT Gene Family AT3G27440 26.966 1.98e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00077 K00855 - gmx:100777515 757.288