Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00075 ATGGGTCGCAAACACGACGCCGTTTTAGTCAGCCAACCAGTCGCCGAAGAAGCGCCTAACAGCCCCGAACTCGAATCGGAGAAGAAGAAGAAAAAGAAGAACAAGAACAAAGACAAGCTTCAAAACGAAGAAAACAGCCCTAAAAGGAGAAAGTTCGACGAACTCGACCTTCAAAACGACAACGAATCAGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCACAACAAGTTGAAAGAGAACACGGAGGAAACCGACGGCGGCGACAAAGGCGGCGATGAAACGGTGACGGACGGGCCCGTGGTGGTTTCAGGGAAGAATGTAGGAGATGCGAAATACGCGGCGCTGAAAGCCTTCGTGGATTCGGGGCTACCGGAGAACGTGCTGGAATGTTGCAAGGGTTTCGATAGGCCTTCTCCGATTCAATCACGAGCATGGCCTTTCTTGTTGGACGGTCGCGATTTGATTGGAATTGCGGCCACTGGATCAGGGAAGACGCTGGCATTTGGAATACCGGCGGTTATGCATGTTCTCAGAAAGCGGAAGAGTAAAGCTTCCAAGGGTCGGAATCCTCTTTGTCTCGTGCTCTCTCCCACTAGGGAGCTAGCTCAACAAATATCGGATGTGATGTGTGATGCTGGTCAGTCTTGTGGTGTGGAATCAATTTGTTTATATGGTGGAACCTCCAAAGGACCACAAATCTCTTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGTCGCCTGAATGAAGTTTCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTACCAGTTCATCACTTAGCGCAGGAGTTTATGAATCCTCATCCTGTAAAAGTTGTTGTAGGTTCAGAGGATTTAGCTGCTAATCATGATGTCATGCAGATAGTCGAGGTCTTGGATGACCGTGCACGTGATAAGCGTCTGATTGCTTTACTGGAAAAATACCACGAATCTCAGAGGAATCGGGTATTGGTTTTTGTTTTGTACAAATTGGAAGCCACACGTGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAGGTTGTTTCAATACATGGGGACAAAGCACAGCATGATCGCACAAAGGCACTGTCATTATTCAAGAAGGGAAGCTGTCCTTTGATGATTGCTACCGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGCAGTGATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAAAAAGGGGTTGCTCATACATTCTTCACACAGCAGAACAAGGGACTTGCTGGGGAGCTCGTGAATGTTTTAAGAGAAGCAGGACAAATTGTTCCAGATGCTCTCTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCAAAGCTTTATGGGGCGCACTTCAAGGAAATTCCTGTGGATGCTCCAAAGTCTCAAAAAATAACATTTGACGATACTGATGATGAAGACTAA 1608 0.4558 MGRKHDAVLVSQPVAEEAPNSPELESEKKKKKKNKNKDKLQNEENSPKRRKFDELDLQNDNESEKKDKKKKKKHNKLKENTEETDGGDKGGDETVTDGPVVVSGKNVGDAKYAALKAFVDSGLPENVLECCKGFDRPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLRKRKSKASKGRNPLCLVLSPTRELAQQISDVMCDAGQSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCRLNEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMNPHPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHESQRNRVLVFVLYKLEATRVEKMLQQGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEAVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKITFDDTDDED 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00075 535 Gene3D - 57 324 IPR027417 -
Sebi50g00075 535 Gene3D - 325 501 IPR027417 -
Sebi50g00075 535 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 494 - -
Sebi50g00075 535 CDD SF2_C_DEAD 336 468 - -
Sebi50g00075 535 MobiDBLite consensus disorder prediction 21 67 - -
Sebi50g00075 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 472 IPR027417 -
Sebi50g00075 535 FunFam ATP-dependent RNA helicase RhlB 325 502 - -
Sebi50g00075 535 Pfam DEAD/DEAH box helicase 139 306 IPR011545 GO:0003676|GO:0005524
Sebi50g00075 535 Coils Coil 52 72 - -
Sebi50g00075 535 SMART ultradead3 133 339 IPR014001 -
Sebi50g00075 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 322 IPR014001 -
Sebi50g00075 535 SMART helicmild6 378 459 IPR001650 -
Sebi50g00075 535 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
Sebi50g00075 535 MobiDBLite consensus disorder prediction 76 92 - -
Sebi50g00075 535 Pfam Helicase conserved C-terminal domain 350 459 IPR001650 -
Sebi50g00075 535 CDD DEADc 132 323 - -
Sebi50g00075 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 498 IPR001650 -
Sebi50g00075 535 MobiDBLite consensus disorder prediction 1 99 - -
Sebi50g00075 535 Coils Coil 23 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00075 Sebi-Chr50 1245793 1251056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00075 115 467 Eukaryotic Initiation Factors Gene Family AT3G19760 32.958 7.11e-55 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00075 K14811 - gmx:100305353 874.004