Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00057 ATGCAAGGGAAAAGAATAAGCTCAGGTCCAAAAAAGCGCGAAGCAAAACCAGAAACTAGATGTGAATGCCTTGCAATGTTTTGTGTTCGAAAAGAGTTATTGAGTGGGGGATGGTATGTGAAAATCTTTAATGATGATCACAATCATGGCATGCTTGAAAACAAGTATTGTGGGATGATGGCAGCTCACCGGAAAATGACTGAGTCTGACATAATGGAAATGAACAGTATGAGAAGTGTTGGGATATCTGTTCCTGATATATATGCCTCTTTTGCTAGTCGGTCTGGAGGCTATGACAAGGTTGGGTTCCGCATAAAGGATATGTACAATCAAATTGACAAACAACGGCGGTTTCAAAGGTCTGATGCAAAAACTGTGCTAAGTGATATTGTATCTAATGAGACAGAAGACACATATGTTTGGCTACTCCAACAATTTAAAGATGCAATGAAAAGGAAGTCACCGAAGGCAGTTATCATAGATGGTGATATGGCTATGAGGAATGCCATAAAAAGAGTGTTTCCAGGGGCACATCACCGACTATGTTCATGGCATTTGCTTCGGAATGCAACTTCAAATGTTGGAATCCCTGCATTTCTTGAAGAGCTAGAAAGGTGTGTGTTTGCTCATGTTGAAGTTGTTGAATTTTCCCGTCGGTGGAGAGACATGGTTTGTAAGTATAATTTAGAGGATAATAATTGGGTTAAAGATTTGTATGAGAAGAAGCATATGTGGGCCACAACATATATAACAGGTCAATTTTTTGCGGGGTTACGGACAACTTCTCGATGTGAGAGTTTGCATGGTCAACTTGGAAGGCAGTCAGCCATGTGGATGATTTACACAATTAAGAGGTACCAAAGTGGTGGAAAAGAATGGTATGTGTCATTCTATCCACCTTCAAATGATTTCAAATGTTGTTGCCAGCGAATGGAATCGTATGGGTTGTCGTGCCCACACATCATATTTGTGTTGGTTTACCTTGACTATGCAGAGATTCCTCCATGTCTAATACTTCAAAGACAAATGTGTAACCTGGCTGTACGGTGTGATGAAGATTTTAACCATATTAAAGAGTGGATAAATTCTGAAATCCAAAGGTTGAAAGATAAATATGGGGATAGGATTTTTGAGCAAGATGCAGATTTGGATGGGCTGGATAGTGGTGTGTTTGATCCTGTTCGCGTTAGAACAAAAGGTTGCCCTAGAGCCTCAACTAGTGTTCCTAGTAAAGGTAGGCGAAAGAACAAGTGTAGCAGGTGTGGCGGATTGGGTCATAATAAAAATGTTGTCCTCAAACTCGCATGTTACAACCTGCTGCCACCCCTTGTGGGATGGGTGGTCAAGAAGGGGGAAGTCAAACATTGTGGCTCTCCATTGATTGGACAAAGTCAACTCAACTCTCAGGCCGAGGAAGGATGCAGTAATGGGCGTGGAACTTGA 1443 0.4144 MQGKRISSGPKKREAKPETRCECLAMFCVRKELLSGGWYVKIFNDDHNHGMLENKYCGMMAAHRKMTESDIMEMNSMRSVGISVPDIYASFASRSGGYDKVGFRIKDMYNQIDKQRRFQRSDAKTVLSDIVSNETEDTYVWLLQQFKDAMKRKSPKAVIIDGDMAMRNAIKRVFPGAHHRLCSWHLLRNATSNVGIPAFLEELERCVFAHVEVVEFSRRWRDMVCKYNLEDNNWVKDLYEKKHMWATTYITGQFFAGLRTTSRCESLHGQLGRQSAMWMIYTIKRYQSGGKEWYVSFYPPSNDFKCCCQRMESYGLSCPHIIFVLVYLDYAEIPPCLILQRQMCNLAVRCDEDFNHIKEWINSEIQRLKDKYGDRIFEQDADLDGLDSGVFDPVRVRTKGCPRASTSVPSKGRRKNKCSRCGGLGHNKNVVLKLACYNLLPPLVGWVVKKGEVKHCGSPLIGQSQLNSQAEEGCSNGRGT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00057 480 Pfam FAR1 DNA-binding domain 11 52 IPR004330 -
Sebi50g00057 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 350 IPR031052 GO:0006355
Sebi50g00057 480 ProSiteProfiles Zinc finger SWIM-type profile. 281 329 IPR007527 GO:0008270
Sebi50g00057 480 Pfam MULE transposase domain 130 189 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00057 Sebi-Chr50 994552 996704 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi50g00057 MULE 3.9e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00057 - - tpra:123896136 286.96