Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00049 ATGCCTCCCTATGGTACTCCACCACATCCTTATGTTGCGATGTATCCCCATGGTGGCATATATGCCCATCCATCCATCCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAACGGTATTGCTGAGGCTTCAGGAAATACTCCTGGCAGCATGGAAGCTGATGGTAAGCCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCAAAGAGCGGTGAGAGTGCAAGTGAAGGCACTAGTGAAGGAAGTGATGCCAATTCTCAGAATGACTCTCAATTGAAATCAGGGGGCAGGCGGGATTCTTTCGAAGATGAACCATCTCAAAATGGCAGTTCGGCGCATACTTCTCAAAATGGGGGACTTAATACACCTCATGCAGTGGTTAACCAAACGATGTCTATCATGCCTATCACTGCAGGTGGTGCTCCTGGAGCTGTTCCGGGCCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGCACACCAACTTCATCCAGCATTCCTGCACTGCGTGGAAAGGTTCCGTCTACTACAGTTGCAGGAGGGATGGTTACTGGTGGATCACGGGATACTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAACTTAAAAGACAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGATCGAGGTTACGCAAGCAGGCCGAGTGTGATGAGCTAGCACAGCGTGCTGAAGCTTTGAAAGAAGAAAACGCTTCCCTCCGATCAGAAGTAAGTCGTATCAGGAGTGAGTATGAGCAGCTACTTTCAGAGAATTCAGCTCTCAAGGAGAGGCTTGGGGAACTACCTGGGAACGATGACCTTAGGTCTGGCAGGAATGATCAACATGTTGTGCATAATGACACTCAACAGAGTGGGCAGACAGAGACTGTGCAGGGTGGTCATTAG 1026 0.4737 MPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGTSEGSDANSQNDSQLKSGGRRDSFEDEPSQNGSSAHTSQNGGLNTPHAVVNQTMSIMPITAGGAPGAVPGPTTNLNIGMDYWGTPTSSSIPALRGKVPSTTVAGGMVTGGSRDTVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLLSENSALKERLGELPGNDDLRSGRNDQHVVHNDTQQSGQTETVQGGH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00049 341 CDD bZIP_plant_GBF1 241 291 IPR045314 GO:0003700|GO:0006355
Sebi50g00049 341 Gene3D - 239 293 - -
Sebi50g00049 341 Coils Coil 256 304 - -
Sebi50g00049 341 MobiDBLite consensus disorder prediction 323 341 - -
Sebi50g00049 341 MobiDBLite consensus disorder prediction 238 260 - -
Sebi50g00049 341 MobiDBLite consensus disorder prediction 140 158 - -
Sebi50g00049 341 SMART brlzneu 236 300 IPR004827 GO:0003700|GO:0006355
Sebi50g00049 341 SUPERFAMILY Leucine zipper domain 239 295 IPR046347 GO:0003700|GO:0006355
Sebi50g00049 341 Pfam G-box binding protein MFMR 1 27 IPR012900 -
Sebi50g00049 341 Pfam bZIP transcription factor 236 298 IPR004827 GO:0003700|GO:0006355
Sebi50g00049 341 MobiDBLite consensus disorder prediction 302 341 - -
Sebi50g00049 341 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 243 258 IPR004827 GO:0003700|GO:0006355
Sebi50g00049 341 MobiDBLite consensus disorder prediction 40 158 - -
Sebi50g00049 341 MobiDBLite consensus disorder prediction 77 129 - -
Sebi50g00049 341 Pfam Disordered region downstream of MFMR 66 203 - -
Sebi50g00049 341 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 333 IPR044827 GO:0003700|GO:0006355|GO:0043565
Sebi50g00049 341 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 238 301 IPR004827 GO:0003700|GO:0006355
Sebi50g00049 341 MobiDBLite consensus disorder prediction 306 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00049 Sebi-Chr50 903492 907882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00049 1 335 bZIP Transcription Factor Family AT2G35530 63.690 2.10e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi50g00049 MFMR_assoc 4.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00049 K09060 - gmx:100101882 601.282