Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00040 ATGGGAGGAAACGTAGTAGTAAACTCAGATTCTCTCTTCTCTTCTTCCATCCAGAACTCTAACTTCAACTTCATGCCTTTCCAGCCTTTTCCTCACATGAAAGAAGATGCCATGATGTTGAGAGGGAAGGAAGAGATGGAGAGTGGTTCTGGTAGTGAGCAAGTTGAAGACAAGTCAGGGAATGAGCAAGAAAGTGAGCAGCCTAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCATCCGGATGATAAGCAGAGGCTAAAACTAAGCCATGATCTAGGCCTGAAGCCTCGGCAGGTTAAGTTCTGGTTCCAGAATCGCCGAACACAGATGAAGGCACAACAAGACCGGGCAGATAACGTGATACTTAGAGCAGAAAATGAGAATCTCAAGAATGAGAACTATCGGTTACAAGCAGCGTTACGTAGTATTATCTGCCCCAATTGTGGTGGTCCATGCATAATGGGCGCTGAGTTGGGCTTGGATGAACAACAACTTCGACTTGAAAATGCCCGCTTAAGAGAAGAGTTAGAACGTGTGTGTTGTATCACTTCAAGATATACTGGGCGTCCAATCCAAACAATGGGAGCAGCTCCTGCTCTTATGGCTCCTTCATTGGATTTGGACATGAACATATACCAAAGACATTTTGCGGATTCAATTGCTCCTTGCACAGAAATGATTCCTGTGCCCATGTTGCCTCCTTCTGAAGCTTCACCGTTTCCAGAGAGTGGTATCTTAATGGAAGATGACAAGTCTATGGCCTTGGAGCTTGCAGCATCTTCCATGGCTGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATACGAAGTAGTGAGAATGAAAGGGAAGTGCTTAATTATGAAGAGCATGCGCGGCTGTTTCCATGTCCTTTGAATCTCAAACACCGAAGTGAACTCAGAACAGAAGCTAGCCGTGACACTGTTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTCTCCAAATAATTTCTTCTGGTGCTTCTGGTCATGCAAGTGGGACTCTTCAGCTGATGTATGCAGAATTCCAAGTTATTTCTCCTTTGGTGTCTACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTATTGACAGCTTGCACCAAAATTTTCACCCTTCTTATCCCAGATACTGCAGGAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAACATGCAAAAGTAGAAGAGAAACCTGTTCATCAGATACTCTGTAACTATGTGTACAGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTCGCCAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCACCAGAAGCACGAAAGAACTTGATGAAACTATCCCAAAGAATGATAAAAACTTTTAGCCTCAACATGAGCACCTCCGGTGGTCAATCATGGACTGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCAAGTGGGGTTATTCTCGGTGCAGTTTCAACCACTTGGCTGCCCTATTCTCATACCAAAGTCTTTGATCTCCTCAGGGATGAACGTCACAGATCTCAGATGGATGCTCTTTCCAATGGAAACTCATTAAATGAAGTCGCTCACATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGTAACTCATCCCAGAATGTGGAGCTAATGCTACAAGAGAGTTGCACAGATCAATCTGGAAGCTTAGTAGTATACACCAACATCGATGTGGAATCCATCCAGCTAGCCATGAGTGGAGAGGACCCTTCTTGCATTTCCCTTCTTCCTCAAGGATTCATGATAGTTCCAATGGCATCATCCAACAATGGTGACACACAATGCCTTGCCATGGATGGCAATTCATCTGAAGCTGCCAATGGATCAGCATCTACTACTAGTGGTGCCAGCAATTCAGGTTGCCTTCTCATCATGGGGATGCAAGTTCTGGCAAGCACAATCCCTTCTGCAAAGATCAACCTTTCAAGCGTGACAGCAATCAATAACCACCTCTGCAACACTCTGCACCAAATTGAAGCTTCTCTTTGTAGCACTAACAGCTGCCTCGTTGGTTCTTGTTCTGAACCCACCGCTAGTGCACCCCCAAAGCAGTGA 2367 0.4478 MGGNVVVNSDSLFSSSIQNSNFNFMPFQPFPHMKEDAMMLRGKEEMESGSGSEQVEDKSGNEQESEQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNENYRLQAALRSIICPNCGGPCIMGAELGLDEQQLRLENARLREELERVCCITSRYTGRPIQTMGAAPALMAPSLDLDMNIYQRHFADSIAPCTEMIPVPMLPPSEASPFPESGILMEDDKSMALELAASSMAELVKMCQTNEPLWIRSSENEREVLNYEEHARLFPCPLNLKHRSELRTEASRDTVVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTLQIISSGASGHASGTLQLMYAEFQVISPLVSTRETHFLRYCQQNAEEGTWAIVDFPIDSLHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQILCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLSQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILGAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTNIDVESIQLAMSGEDPSCISLLPQGFMIVPMASSNNGDTQCLAMDGNSSEAANGSASTTSGASNSGCLLIMGMQVLASTIPSAKINLSSVTAINNHLCNTLHQIEASLCSTNSCLVGSCSEPTASAPPKQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00040 788 FunFam Homeobox-leucine zipper protein HDG1 55 143 - -
Sebi50g00040 788 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 766 IPR042160 -
Sebi50g00040 788 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Sebi50g00040 788 ProSiteProfiles START domain profile. 261 498 IPR002913 GO:0008289
Sebi50g00040 788 SMART START_1 270 495 IPR002913 GO:0008289
Sebi50g00040 788 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Sebi50g00040 788 Gene3D - 270 481 IPR023393 -
Sebi50g00040 788 MobiDBLite consensus disorder prediction 43 77 - -
Sebi50g00040 788 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Sebi50g00040 788 SUPERFAMILY Bet v1-like 513 763 - -
Sebi50g00040 788 Gene3D - 55 138 - -
Sebi50g00040 788 CDD homeodomain 70 128 IPR001356 GO:0003677
Sebi50g00040 788 SUPERFAMILY Bet v1-like 263 497 - -
Sebi50g00040 788 Pfam START domain 271 495 IPR002913 GO:0008289
Sebi50g00040 788 Coils Coil 126 153 - -
Sebi50g00040 788 SMART HOX_1 68 131 IPR001356 GO:0003677
Sebi50g00040 788 CDD START_ArGLABRA2_like 265 494 - -
Sebi50g00040 788 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Sebi50g00040 788 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00040 Sebi-Chr50 751032 755309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00040 16 779 Homeobox Transcription Factor Family AT5G46880 56.410 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi50g00040 START 4.4e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00040 - - gmx:100812829 1306.97