Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00039 ATGATGAACAGAAGTGGAGGAGATGCGTTAAGAGCCTCAGGATCATGTGGCATGGGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAAGTGGATAAGTTTGACACCAGTGATCTGGATTGGGCTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGACCCTTTGATTTACTTGCAAAAGATAGCCCCAGAAGCATCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTTCCTGCTGGGATTGTTTTAATGAAGGAGAAACCGGGATTCAAATTTACAACTAGAGTGCAGCCCCTTCGCCTAGCTGAATGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATCGCGAACAAAGCTTTTGCACGAAGATATTGCAGTGCCGGATGTCTTCCTGCAACATACTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGATGAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCACGATTGCACAAATCAGTTTTGCGGCTCTTGGAAACGTCAATTCCGGGAGTAACAGAACCCATGCTGTACATTGGAATGCTGTTTAGCATGTTTGCTTGGCATGTGGAGGATCATTATCTGTACAGGGTGGTGAGAGAACATGTTTATACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTGTTTCCACCAAATATTTTGTTGGAGCATAAGGTCCCTGTCTACAAAGCAGTTCAGAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATGGGTGATTGGTTTCCTCTAGGTGCTATTGCTAGCCGGAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAGGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGATTCAGACTTTCCCTCTTTAGACTCATTTTCTCATAAGAGTATTAAGATTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCTCGTTGGTTCCTAATGAAATCAAGGGCATGTATAAGTGTGGCTTCTCATTCGCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGCTATATAGCTTATGTTGACTGCAACTGTCACATGCACCCTGTGTGCCTACGTCATGATGTTGAATCTGTTGACTTCATGTGTGGGAGCAAACACACACTTTATGTGAGGGAGGATATTACGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATACTGAATGAGATAAACAAGCAAACTGAAAGTGACCAAAATATGTATTCATACCCATTGTCAAAAATGTTTCAGAGAGCTGAAGCAAATGGATACTCACTTTATTGTGAGCTAAAACTTGATTCTGTTATAGAATTTTATACAACTCCAGAACAGGCAGCAAATAATCAAGAGTGTGAGCCTCTTGACAGCTTCTCTGCTCCCAAGAATCTGGCTGAGGAGCATAATAGCTTAAATTTAGGCGGTACTGATTATGAAGTATCCAACAGTGCATGTGAATCTTCACTATCCCCTGCTTTGTATCATGAAAGCTCAGCTAAATCACATGGTGATGTTCAAAGATTTGACACAAAGCCCGTTGTGGATAATGAGAGTGATGATTCTGATTCAGGGATATTTAGGGTAAAGCGCCCTTCTTCCCTGAAAGCAGAGAAGAGAAATATGAATGGTGCTATTTCTTCAAAGCATTCTGAGCAGCAGGGGCTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAAAGGTGGTCAACCAATGGCTGTTAGCCGAACCAGTGAATCAAATTACAAATATAGTTACCCTGTTAATCATAAAGTTGATGGTGAAATTTCCTCAAAGGACAGATTTGCAAGGGGAAATGGCATTCCCATTTCTATAAGATATAAGAAGTTGGGCAATGAGGAAATAAGTGTGCAACGAGATCACCACCGGAGAGATAGGCCTAACATTTGGGCAATCTGCACGGGTGGTGATCCTTTGGGTTCTCTGGCCGAGGTGTTTTTCCAACTTTGGCGGGTGAACCTGACCTGCAAAGCTAGGACTTAG 2268 0.418 MMNRSGGDALRASGSCGMGLHGNADAFSKRKVDKFDTSDLDWADKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGIVLMKEKPGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKIANKAFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDELGNSKWNLKKLSRLHKSVLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYRVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLHTCLELEDSDFPSLDSFSHKSIKISFVNLMRFQHCARWFLMKSRACISVASHSHGTILCSLCKRDCYIAYVDCNCHMHPVCLRHDVESVDFMCGSKHTLYVREDITDMEAAAKMFEQEDGILNEINKQTESDQNMYSYPLSKMFQRAEANGYSLYCELKLDSVIEFYTTPEQAANNQECEPLDSFSAPKNLAEEHNSLNLGGTDYEVSNSACESSLSPALYHESSAKSHGDVQRFDTKPVVDNESDDSDSGIFRVKRPSSLKAEKRNMNGAISSKHSEQQGLKRLKKVLPEGKGGQPMAVSRTSESNYKYSYPVNHKVDGEISSKDRFARGNGIPISIRYKKLGNEEISVQRDHHRRDRPNIWAICTGGDPLGSLAEVFFQLWRVNLTCKART 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00039 755 ProSiteProfiles JmjC domain profile. 193 341 IPR003347 -
Sebi50g00039 755 SMART JmjN_1 48 89 IPR003349 -
Sebi50g00039 755 SUPERFAMILY Clavaminate synthase-like 127 357 - -
Sebi50g00039 755 Pfam JmjC domain, hydroxylase 226 324 IPR003347 -
Sebi50g00039 755 ProSiteProfiles JmjN domain profile. 49 90 IPR003349 -
Sebi50g00039 755 Pfam C5HC2 zinc finger 421 472 IPR004198 -
Sebi50g00039 755 SMART cupin_9 193 341 IPR003347 -
Sebi50g00039 755 PANTHER LYSINE-SPECIFIC DEMETHYLASE 42 649 - -
Sebi50g00039 755 Gene3D Cupin 43 346 - -
Sebi50g00039 755 Pfam jmjN domain 50 82 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00039 Sebi-Chr50 726236 730750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00039 46 480 JUMONJI Transcription Factor Family AT2G34880 30.639 2.84e-48 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi50g00039 JmjC 4.2e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00039 - - gmx:100798611 1257.28