Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00034 ATGGGTATGGCCTCTTCGTTACTGATCCTAGCTTCAATTTCAACTTTTCACTTTTCATTTGCAGCAATCCACGTTCTCCCCCAGGGTTCATCCTTGTCAGTGGAGAATCCAGATGTTCTCCTTTCACAAAACGGCGTATTCTCCGCTGGCTTTCACGCCGTCGGTACTAACGCTTACTGCTTTGCCGTCTGGTTCACTCCAAACCCCACCGTCGTTTGGATGGCAAACCGCGACCAACCGGTAAACGGAAAGCGCTCAACTCTCTCCCTCATCAAAACCGGCAATCTTCTCTTACAAGACGCCGGAGAATTCACCGTTTGGGCCACCGACACTTCTTCTCAATCCTCCGTCGAGCTAGTCCTCAGCAACACCGGTAACCTCGTTCTACGCGAAACAGGGTCTGTTCCAGGGCTCACGTTATGGCAGAGCTTTGATTTCCCAACAGATACTCTTCTTCCTCAACAACAACTCTCCAGGTACACAAAACTAGTCTCATCAATAAGTGAGAGTAACCACTCCTCTGGTTTTTATAATCTGTTTTTTGACAACGACAATGTTATTCGCCTTCTTTACAACGGCCCTGAAATTTCTAGCATTTATTGGCCCGATCCAGGGTTGGTGAGTTGGGAGGCAGGAAGGTCAACTTACAATGGAAGTAGAATTGCAGTGCTTAATTCTTTGGGAAATTTTAGTTCATCAGATGATCTTACTTTCATGACATCTGATTACGGTACAGTACTTCAGAGAAGATTAACTGTTGATTACGATGGCAATATTAGAGTCTATAGCCGGAAAAATGGGAAAGAGGAGTGGTATGTTTCATGGCAAGCCATATCAAAACCTTGTACCATTCATGGCATATGTGGTGCTAATAGCACTTGTAGCTATGATCCTGCAGGTTCCGGAAGGAAATGTTCTTGCCTTCCTGGTTATAAACCCAAAAATGGTGGTAGTGATTGGTCTTTAGGGTGTGAACCAATATACAATTCATCTTGCACCAAAACTAGCACTGGGTCTGGGTCTTACTTTCTACGCTTACCCCATGTTGATTTCTATGGTTATGATTCTGGATTTTTCCCTAATTACACCTTACAGGAATGCTTGAATATATGTCTGCAATCCTGTAACTGTAAAAGCATTCAGTATAAGTTCGTTGTTGAAAAAGGCCAGTTTAATTGTTACCCGAAAACGATGCTGTTGAATGGGTATCGTTCACCAGATTTCCAAGGAGATATCTACTTGAAACTTCCTGCAAGTTTCAGGGAGTTCACTCACCCTGAAGCATTGGTTGAAGGAACAAATAGACTTTGTGATTCCACTGGAACGATCTTACTTGATAGAAGCTATATGAGAAGTCATCAAAATGGAAAAGTAAACCTCTTGTTATGGTTGGCTAGTTGTGCAGGAGTTCTTGAGATCATTTGTATCCTTTTGATTTTGTGTTTCTTGCGAATGCTAAGAACCCCAGGACAGTCTGATGCATATGCACAAGGTGAAGAGATTGGTAGAGGTGCAGCTGGGATTGTGTACAAAGGTGAATTGTCTGATCAACAAGTTGTGGCAATAAAGAGACTCAATGAAGCTTATCAAGGAGAGGATGAATTTCTCGATGAGGTAAGCATCGTTGGAAGGCTTAACCACATGAACTTGATCAAAATGTGGGGATATTGTGCAGAGGGAAAGCACAGGCTATTGGTGTATGAGTACATGGAGAAAGGTTCATTGGCTGAAAACCTTACATCCAATGCACTGGACTTCAATAGAAGGTTCAGCATTGCATTGGGTATGGCAAGGGGTCTAGCCTATTTGCATGAGGAATGCTTGGAATGGATTTTGCACTGTGATGTGAAGCCTCAAAACATACTTCTGGATTCTAGTTATCAACCCAAGGTATCAGATTTTGGCCTATCCAAGCTACTAAATAGAAATGAGAGTGAAAATTCAAATTTCTCAAGCATAAGAGGAACCAGAGGGTACATGGCTCCTGAGTGGGTTTTCAATTTGCAAATTACCTCCAAAGTAGATGTCTATAGCTATGGAATTGTGGTCCTTGAGATGGTGACAGGAAAGAGTCCTACAATGGGAGGTGGTACAGAAGAAAAGCAGCATTGGCGGCTGGCTAAATGGGTGAGGGAGAAAAGAGGTAAAGGATCCACAAAGGCGTCGTGGTTGAAACAGATAGTGGACCCAGTTATGGGAGGGAAATGTGACTCGGAGAGATTGGAAATTTTGGTTGAAGTTGCCTTGCAATGCGCGGAAGAAAACAGAGATGCAAGGCCCACCATGAGACAAGTTGTGGAGATGCTACAGAGCCATGAAAATGATTAA 2328 0.4321 MGMASSLLILASISTFHFSFAAIHVLPQGSSLSVENPDVLLSQNGVFSAGFHAVGTNAYCFAVWFTPNPTVVWMANRDQPVNGKRSTLSLIKTGNLLLQDAGEFTVWATDTSSQSSVELVLSNTGNLVLRETGSVPGLTLWQSFDFPTDTLLPQQQLSRYTKLVSSISESNHSSGFYNLFFDNDNVIRLLYNGPEISSIYWPDPGLVSWEAGRSTYNGSRIAVLNSLGNFSSSDDLTFMTSDYGTVLQRRLTVDYDGNIRVYSRKNGKEEWYVSWQAISKPCTIHGICGANSTCSYDPAGSGRKCSCLPGYKPKNGGSDWSLGCEPIYNSSCTKTSTGSGSYFLRLPHVDFYGYDSGFFPNYTLQECLNICLQSCNCKSIQYKFVVEKGQFNCYPKTMLLNGYRSPDFQGDIYLKLPASFREFTHPEALVEGTNRLCDSTGTILLDRSYMRSHQNGKVNLLLWLASCAGVLEIICILLILCFLRMLRTPGQSDAYAQGEEIGRGAAGIVYKGELSDQQVVAIKRLNEAYQGEDEFLDEVSIVGRLNHMNLIKMWGYCAEGKHRLLVYEYMEKGSLAENLTSNALDFNRRFSIALGMARGLAYLHEECLEWILHCDVKPQNILLDSSYQPKVSDFGLSKLLNRNESENSNFSSIRGTRGYMAPEWVFNLQITSKVDVYSYGIVVLEMVTGKSPTMGGGTEEKQHWRLAKWVREKRGKGSTKASWLKQIVDPVMGGKCDSERLEILVEVALQCAEENRDARPTMRQVVEMLQSHEND 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00034 775 FunFam Serine/threonine-protein kinase 148 275 - -
Sebi50g00034 775 ProSiteProfiles PAN/Apple domain profile. 332 417 IPR003609 -
Sebi50g00034 775 SMART blect_4 31 147 IPR001480 -
Sebi50g00034 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Sebi50g00034 775 CDD STKc_IRAK 501 770 - -
Sebi50g00034 775 FunFam S-receptor-like serine/threonine-protein kinase 492 569 - -
Sebi50g00034 775 PANTHER OS07G0415500 PROTEIN 6 772 - -
Sebi50g00034 775 Gene3D - 20 145 IPR036426 -
Sebi50g00034 775 ProSiteProfiles EGF-like domain profile. 278 317 IPR000742 -
Sebi50g00034 775 PIRSF SRK 1 497 IPR024171 GO:0004674
Sebi50g00034 775 PIRSF SRK 493 775 IPR024171 GO:0004674
Sebi50g00034 775 Gene3D - 146 273 IPR036426 -
Sebi50g00034 775 SMART ntp_6 338 416 IPR003609 -
Sebi50g00034 775 ProSiteProfiles Protein kinase domain profile. 495 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00034 775 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 203 IPR036426 -
Sebi50g00034 775 SMART serkin_6 495 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00034 775 ProSiteProfiles Ig-like domain profile. 37 122 IPR007110 -
Sebi50g00034 775 CDD EGF 281 311 - -
Sebi50g00034 775 Gene3D Phosphorylase Kinase; domain 1 491 569 - -
Sebi50g00034 775 CDD PAN_AP_plant 329 417 - -
Sebi50g00034 775 CDD B_lectin 40 147 IPR001480 -
Sebi50g00034 775 SUPERFAMILY Protein kinase-like (PK-like) 491 769 IPR011009 -
Sebi50g00034 775 Gene3D Transferase(Phosphotransferase) domain 1 570 775 - -
Sebi50g00034 775 Pfam Protein kinase domain 495 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00034 775 FunFam Putative receptor-like protein kinase 570 775 - -
Sebi50g00034 775 ProSiteProfiles Bulb-type lectin domain profile. 25 142 IPR001480 -
Sebi50g00034 775 Pfam D-mannose binding lectin 70 159 IPR001480 -
Sebi50g00034 775 Pfam S-locus glycoprotein domain 241 315 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00034 Sebi-Chr50 637939 640337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00034 501 770 Receptor kinase-like Gene Family AT1G60800 41.516 8.32e-60 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi50g00034 Pkinase 1.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00034 - - qsa:O6P43_018970 941.799