Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00033 ATGCATTCCCTCCTCGTCTTCCTTTTTCTCCTCCAGTTTGCCTCAACTTCATCTGCGGTGTCAGACACACTCCCACAAAGCTCGTCTCTTTCAGTTGAGAAACCAAGTGACACTCTGGTTTCAGCCAATGGTGACTTCTCCGCGGGCTTCTTCCAAGTCGGGGATAACGCTTTCTGTTTCTCAGTATGGTTCACAAGGTCCAAACAACCCACCATTGTTTGGATGGCAAACCGGGACACACCCGTCAACGGTAAAGGCTCACAATTAACACTCCGAAAAGATGGCGATCTCATTCTGATGGATGCAGGCAGAACCACTATTTGGAACAGTGCTACATTCTCCCCCTCGCAGTTGCAGTTGCAATTGAAGCTCATGGACAGCGGCAACCTTGTTCTTGGAACTTTACAAGGCACTACCATTTGGCAAAGCTTTAACTTCCCTACAGATACCCTTCTTCCAGATCAATCATTCTTACAGACAGCAAGCCTTGTTTCATCAAGAAGCACAACAAACTATTCATCCGGTTTCTATAAACTTTATTTTGACAATGATAATGTTATTCGTTTGCTTTTCAATGGTCCCGCTTTATCTAGCATATACTGGCCACCCACTTGGATTTCGCCAATTGATATTGGCAGATCCACCTATAATATAACTAGATTCGCAGTGCTAGATTCTTTTGGCAAGTTTACCTCCTCTGATGGCTTCCAAATCCTTTCCACGGATTATGGGAGGAGACTGTATAGACGGCTCAAGATAGATCCTGACGGCAACTTGCGTCTCTACAGCTTCAACAAGGACCGTCAGATGTGGGAGGTATCATGGCAATTGATTTCGGATACATGCTCCGTTCATGGCCTTTGTGGAGCTAACAGCATGTGCACTTATGATCATGTATCTGGTAGGACTTGCTATTGCTTGCAAGGATATAAGGCTAAGGATCCCAATGACTGGACACAGGGTTGTGTGCCTGACTTTAGCCCTGCCGATCTCTCCTGTAATAATAATCAAACTGATGAGTCTATGGATTTCCTCCATCTGGCGAACGCAGAATTGTTTGGTTATGACTGGAACGTAACCGAAGTTACAAGCTTGAAGGAATGCCAGAAAATATGCTTGGAGCTTTGTGATAAATGCAAAGGTATCCAACTCCAATTCAACGACGATACTACTTATAATTGTTATCTTAAAACATTACTGCTCAATGGGCGGGATTCCCCCAGCTTCGACGGGGATTTCTATCTGAAATTGCCAAAAGTGACTCTGCAATATTCCAAAAAGCCTCTTAAACACTCACCGTTGAACTGTGCCACTGGTTTGTCTCCACCCCTAAATCCTAGAACAAATTCAAACTCGTCCACGAGTTTCTTGGTTTGGTTCGCTTGCGGGATAGGGGCCTTTGAGGTGTCCACCATTTTCCTTGTATGGTTTTTCTTGTTTAGGACCAAAAAGCAACCCGATACAACATATCAACAACGGGACCTCCTTTCAGCCACAAGGTTTCAAAGGTTCACCTTTGCAGAGCTCAAAAGCGCAACAAAAGGATTCAATGAAGAAATTGGGCGAGGAGCGGGAGGTGTTGTATACAAAGGGATATTATATGATAATCGCGTTGCCGCTATAAAACGCCTAAGCGAAGCTACTCAAGGAGAAGAAGAATTCCTTGCCGAAATGAGCACAATTGGCATGTTGAACCACATGAATTTGATTGACATGTGGGGATATTGTGTTGAGGGGAAACACAGGCTGTTGGTGTATGAGTATATGGAGCATGGATCCTTAGCACACAATCTTTTTTGTAACACACTTGATTGGAAGAAGAGGTTTGATATAGCTGTAGGTACAGCGAGAGGGCTATCTTATTTACATGAGGAGTGTTTGGAATGGGTTTTACATTGCGATGTGAAGCCTCAAAACATTCTACTTGATTCTGATTTCCAACCCAAGGTAGCAGATTTTGGCTTGTCGAAACTTTTAAATAGAGATGGGCATGGCAATTCTGCTATTTCTAGAATAAGAGGAACTCGAGGTTATATGGCTCCGGAGTGGGTATACAATCTTCGCATTACTTCAAAGGTGGATGTGTACAGCTATGGAATTGTTGTGTTGGAAATGGTAACGGGAAAGAGCCCAATGGCATTGCACAGCCTTGAGAACAGTACGGGCACAGAGCACCGTCGGTTGGTGACATGGGTGACAAGCAAGATAAACAATGCGCTCACAACCATGTTTTGGATTGAGGAGATAATTGATCCCAAACTGGAAGGCCGTTACGACATTTCGCAGATTGAGATTTTGGTTAAAGTAGCTCTGCAATGTGTGCAAGATGACATGAATGAAAGACCATCCATGAGCCAAGTAGCGGAGATGCTCCAGTCCCATGAAAATAAAGTCTCCCCTAGTTAG 2406 0.4406 MHSLLVFLFLLQFASTSSAVSDTLPQSSSLSVEKPSDTLVSANGDFSAGFFQVGDNAFCFSVWFTRSKQPTIVWMANRDTPVNGKGSQLTLRKDGDLILMDAGRTTIWNSATFSPSQLQLQLKLMDSGNLVLGTLQGTTIWQSFNFPTDTLLPDQSFLQTASLVSSRSTTNYSSGFYKLYFDNDNVIRLLFNGPALSSIYWPPTWISPIDIGRSTYNITRFAVLDSFGKFTSSDGFQILSTDYGRRLYRRLKIDPDGNLRLYSFNKDRQMWEVSWQLISDTCSVHGLCGANSMCTYDHVSGRTCYCLQGYKAKDPNDWTQGCVPDFSPADLSCNNNQTDESMDFLHLANAELFGYDWNVTEVTSLKECQKICLELCDKCKGIQLQFNDDTTYNCYLKTLLLNGRDSPSFDGDFYLKLPKVTLQYSKKPLKHSPLNCATGLSPPLNPRTNSNSSTSFLVWFACGIGAFEVSTIFLVWFFLFRTKKQPDTTYQQRDLLSATRFQRFTFAELKSATKGFNEEIGRGAGGVVYKGILYDNRVAAIKRLSEATQGEEEFLAEMSTIGMLNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLAHNLFCNTLDWKKRFDIAVGTARGLSYLHEECLEWVLHCDVKPQNILLDSDFQPKVADFGLSKLLNRDGHGNSAISRIRGTRGYMAPEWVYNLRITSKVDVYSYGIVVLEMVTGKSPMALHSLENSTGTEHRRLVTWVTSKINNALTTMFWIEEIIDPKLEGRYDISQIEILVKVALQCVQDDMNERPSMSQVAEMLQSHENKVSPS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00033 801 PIRSF SRK 1 801 IPR024171 GO:0004674
Sebi50g00033 801 CDD PAN_AP_plant 330 418 - -
Sebi50g00033 801 CDD B_lectin 38 147 IPR001480 -
Sebi50g00033 801 ProSiteProfiles PAN/Apple domain profile. 333 418 IPR003609 -
Sebi50g00033 801 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524
Sebi50g00033 801 Pfam Protein kinase domain 517 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00033 801 Gene3D Phosphorylase Kinase; domain 1 480 588 - -
Sebi50g00033 801 FunFam Serine/threonine-protein kinase 17 145 - -
Sebi50g00033 801 FunFam S-receptor-like serine/threonine-protein kinase 483 588 - -
Sebi50g00033 801 FunFam Serine/threonine-protein kinase 589 799 - -
Sebi50g00033 801 PANTHER OS07G0415500 PROTEIN 3 794 - -
Sebi50g00033 801 SMART ntp_6 339 417 IPR003609 -
Sebi50g00033 801 Pfam S-locus glycoprotein domain 244 313 IPR000858 GO:0048544
Sebi50g00033 801 SMART blect_4 27 147 IPR001480 -
Sebi50g00033 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 202 IPR036426 -
Sebi50g00033 801 Pfam D-mannose binding lectin 71 158 IPR001480 -
Sebi50g00033 801 SMART serkin_6 514 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00033 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Sebi50g00033 801 CDD STKc_IRAK 520 792 - -
Sebi50g00033 801 ProSiteProfiles Protein kinase domain profile. 514 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00033 801 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Sebi50g00033 801 Gene3D Transferase(Phosphotransferase) domain 1 589 800 - -
Sebi50g00033 801 SUPERFAMILY Protein kinase-like (PK-like) 496 791 IPR011009 -
Sebi50g00033 801 Gene3D - 15 145 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00033 Sebi-Chr50 605485 607890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00033 432 792 Receptor kinase-like Gene Family AT5G45780 37.265 8.44e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi50g00033 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00033 - - gmx:100816469 1186.02