Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00027 ATGGATCGCATTAAAGGGCCATGGAGCCCCGAAGAAGACGAAGCGTTACGGAGGCTGGTTCAGACTCACGGGCCTAGAAACTGGTCATTGATAAGCAAATCCATTCCGGGTCGATCCGGGAAGTCATGCCGGTTGCAGTGGTGTAACCAACTGTCTCCGGAGGTGGAGCACAGGTCTTTCACTTCAGAGGAAGACGAGACCATTATCAAAGCCCATGCTAAGTTTGGCAACAAATGGGCTACAATTGCTCGTTTGCTTAATGGCCGCACCGACAACGCTATAAAAAATCACTGGAATTCCACTCTCAAGAGAAAATGCTCCGCCATCTCCGATACTCTCACCGACCACCACCACCAACAGCCTCACAAAAGATCGGCCAGTGTTGGTGCGGACACCGTCTCGGGTTTCTACTTGACTCCGAGCAGCCCATCCAGATCTGATTTGAGCGATTCTAGTTTACCTATTGTGTCTTCAACTCCGTCTCTGTTTCCAAGGAGCGCAACCGTCGTGGAAACTGCGTCTTCTTCTGCCACTGATCCACCCACGTCACTCTGCTTATCTTTGCCCGGATCCTATTCCTGTGATGTCTCTAACAAAGGATCTGGCACGAATCGGGTATCCGGTTGCAGTGATCAATTTGGTTGCGAGAAACAGTTATTTAGCGCAGAGTTTTTGGCCGTGATGCAAGAGATGGTACGAATGGAAGTGAGGAATTACATGTCTGGGATAGAGCATAAAGGTCTGTGTATGCAGACCCAAGCCATTAGAAACGCTATGATGAAGCGTATGGGAATTGGCAGGGTTGAGTAG 810 0.4963 MDRIKGPWSPEEDEALRRLVQTHGPRNWSLISKSIPGRSGKSCRLQWCNQLSPEVEHRSFTSEEDETIIKAHAKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSAISDTLTDHHHQQPHKRSASVGADTVSGFYLTPSSPSRSDLSDSSLPIVSSTPSLFPRSATVVETASSSATDPPTSLCLSLPGSYSCDVSNKGSGTNRVSGCSDQFGCEKQLFSAEFLAVMQEMVRMEVRNYMSGIEHKGLCMQTQAIRNAMMKRMGIGRVE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00027 269 Gene3D - 58 129 - -
Sebi50g00027 269 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Sebi50g00027 269 CDD SANT 7 49 IPR001005 -
Sebi50g00027 269 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Sebi50g00027 269 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Sebi50g00027 269 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Sebi50g00027 269 CDD SANT 59 102 IPR001005 -
Sebi50g00027 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Sebi50g00027 269 PANTHER MYB PROTEIN-RELATED 5 134 - -
Sebi50g00027 269 Gene3D - 4 56 - -
Sebi50g00027 269 FunFam Transcription factor MYB44 59 105 - -
Sebi50g00027 269 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Sebi50g00027 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Sebi50g00027 269 SMART sant 4 53 IPR001005 -
Sebi50g00027 269 SMART sant 56 104 IPR001005 -
Sebi50g00027 269 FunFam MYB transcription factor 5 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00027 Sebi-Chr50 516795 517604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00027 1 269 MYB Transcription Factor Family AT4G37260 47.368 2.96e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi50g00027 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00027 K09422 - cpap:110818856 370.548