Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00020 ATGGCTCTTCTTGATGCCCTCTACTGCTCTGAAGAACATTGGGAGGAACATGTAGGCGAAGATGAATTTGAGTTATGTAGTGATTCCTTAAGCGCTAATACTAGTAGTACCATAATAAATTCCCCTCCTTGGTTACTAGAAACGGACATGTTCTGGGACGATGAAGAGCTAACATCACTGTTAGCTAAAGAACAACACAACCCACTTTTCCCCTGTCTCCAAAACAACCCTGTTTTGGAGAGTGCTCGTAGAGAAGCAGTGGAGTGGATGATGAAAGTGAATGCACACTACTCCTTCTCTGCTCTCACTGCTGTTCTTGCTGTTGATTACTTAGACAGGTTCCTTTTCAGCTTCCGTTTTCAGAATGGGAAGCCATGGATGACTCAGCTTGCTGCTGTTGCTTGTCTCTCCCTTGCTGCCAAAGTGGAGGAGACTCAAGTTCCCCTTTTACTAGACCTTCAAGTGGAGGACAGTAGATACTTGTTTGAAGCTAAGACTATTAAAAGGATGGAGATTTTGGTACTTTCAACTCTTGGATGGAAGATGAATCCAGCAACATCTCTCTCTTTTGTTGATTATATCATAAGAAGACTTGGATTGAAGGATCATCTCTGCCGGGAGTACCTAAGGAGATGTGAGGGTGTTCTTCTCTCTGTCATTGGAGATTCTAGATTTATGAGTTATCTGCCTTCTGTGTTGGCAACTGCTACAATGATGCATGTTGTCAACAGCGTGGAGCCTCATCTAGGAGTCGAATACCAAAGCCAGCTACTTGGTATTCTTGGAATCAACAAGGAAAAGGTGGATGAATGTTGCAAGGTTATGTTGGAAGTGTGGTCAGGGTATGAGCAGGGGAAGCAATGCATCAAACGCAAGTTTGGGTCCATTCCTGGTAGCCCAAATGGCGTAATGGATGTGTCTTTTAGCTGTGATAGCTCCAATGACTCTTGGGCTGTAGCTGCTGCTTCTGTGTCATCCTCACCAGAGCCTTTGTCCAAGAAAACTAGGAGCTTCAACTAA 1020 0.4422 MALLDALYCSEEHWEEHVGEDEFELCSDSLSANTSSTIINSPPWLLETDMFWDDEELTSLLAKEQHNPLFPCLQNNPVLESARREAVEWMMKVNAHYSFSALTAVLAVDYLDRFLFSFRFQNGKPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKRMEILVLSTLGWKMNPATSLSFVDYIIRRLGLKDHLCREYLRRCEGVLLSVIGDSRFMSYLPSVLATATMMHVVNSVEPHLGVEYQSQLLGILGINKEKVDECCKVMLEVWSGYEQGKQCIKRKFGSIPGSPNGVMDVSFSCDSSNDSWAVAAASVSSSPEPLSKKTRSFN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00020 339 Gene3D - 184 273 - -
Sebi50g00020 339 Pfam Cyclin, C-terminal domain 186 309 IPR004367 -
Sebi50g00020 339 FunFam D3-type cyclin 76 183 - -
Sebi50g00020 339 Gene3D - 68 183 - -
Sebi50g00020 339 Pfam Cyclin, N-terminal domain 73 183 IPR006671 -
Sebi50g00020 339 CDD CYCLIN_AtCycD-like_rpt1 82 180 - -
Sebi50g00020 339 CDD CYCLIN_AtCycD-like_rpt2 186 275 - -
Sebi50g00020 339 SMART Cyclin_C_2 185 312 IPR004367 -
Sebi50g00020 339 FunFam CYCLIN D32 184 273 - -
Sebi50g00020 339 SUPERFAMILY Cyclin-like 51 183 IPR036915 -
Sebi50g00020 339 PANTHER CYCLINS 60 283 IPR039361 -
Sebi50g00020 339 SMART cyclin_7 88 176 IPR013763 -
Sebi50g00020 339 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
Sebi50g00020 339 SUPERFAMILY Cyclin-like 186 295 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00020 Sebi-Chr50 345504 346788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00020 3 278 Core Cell Cycle Gene Families AT4G34160 53.623 3.40e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00020 K14505 - gmx:100811122 458.373