Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00012 ATGGTGAAGAGAAAGCAGTTTGACATGTGGATGCTGATGCTGATGCTATTGCTGCTGTCAAACACATTCTGTTACTGCTCCAAAAACGGAGATCATCATCTTCCACCGCCAGATGCTGCCGCTCTGCTTGCGTTCAAATCAAAAGCTGATCTGAACAACCGCCTCAACTTCTCCCGCCACCTCTATTTCTGCAAGTGGCAAGGTGTCGAATGCAACAACGGAACCAAAGTGGTCCATCTCCTTCTGCGAGGTTTAGATCTCGGAGGAGTTTTCGCTCCTCACACATTGTCCCGTCTTGACCAGCTCCGAGTCCTTAGTTTGCAAAACAACTCCCTCACCGGACCCATACCTGACCTCTCTGGTCTCTTCAATCTCAAAACCCTCTTCCTCGACAACAACCACTTCAACGGTTCTCTTCCTCCTTCTCTCTTCTCCCTTCACAGGCTTCGAACCTTGGATTTCTCTCACAACAATCTCTCCGGTCCCATCCCCGTCGCTTTCAACAACCTCGACCGTATCATCTACCTCTCTCTCAGTTGGAACGCTTTCAACGGTACCGTTCCTCCTCTCAACCAGTCTTCTCTCAAAACCTTCAACGTCTCCGGTAACAACCTCACCGGCGCCATTCCCGTTACGCCGACGCTGTTCCGTCTCCAGCCATCTTCCTTCGCTTCCAACCCTGGTCTCTGCGGCGAAATCATCCGCAGAGAATGCCGCCCTACCGCGCCTTTCTTCGCGCCGTCCTCGCCGCCGACGGTGGGGCTAGGCCAGAGCGCGCAGGTCCACGGCTTAATCCGGCAGCCGTACGAGAAGAGGCACGACCGGAGGGCGGTGATCATCGGTTTCTCGGCCGGAGTTTTTGTTCTGATCGGTTCGCTGGCGTGCTTCGTTGTGGCCATCAAGAAGCAAAGAAGCAAGAAAGGAGTTTCTTCTTCAGGTTCAAGTATAATGGCTTCGGATGCAGCTGCAACAGCAGAAGCTGCGGTTGTGGTGCAAATGGAGCAAGAGAGGGAGTTGGAGGAGAAGGTGAAGAGAGCGCAAGTGGCGAAGAGTGGGAGTTTAGTATTCTGTGCGGGTGAGGCACAGGTATATACCCTGGACCAGTTGATGAAAGGTTCTGCGGAGCTATTGGGTAGAGGGAGTTTGGGAACAACTTATAAGGCGGTGCTTGACAACCGTCTGATCGTAACGGTAAAGCGCCTTGATGCGAGCAAAATGGCTGCGCACGCAACCAAGGAAGTGTTTGAGCGACACATGGAATCAGTGGGTGGTCTTCGTCATCCTAATTTGGTTCCTCTTAGGGCTTATTTTCAGGCCAATCAAGAGAGACTCATTATCTATGACTACCAGCCCAATGGCAGTCTCTTCTCCCTCGTACACGGTTCCAGATCAAGCAGGGCAAGGCCATTGCACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGCCTGTCCTACATCCACCAGGCATGGAGGCTGGTCCATGGCAATCTCAGGTCCTCCAATGTTCTACTTGGACCTGATTTTGAGGCATGCATCACAGATTACTGCCTCTCTGTGTTGACTAACCCATCAGTTTTCGATGAAGAGGGTGATTCTGCAGCCTACAGAGCTCCAGAGACTCGCAATCCAAATCACCAGCCAACCCCCAAATCCGACGTTTATGCATATGGGATTTTGTTGCTGGAGCTTCTGACGGGAAAATCTCCTTCCGAGCTCCCATTCATGGTTCCGGGTGATATGTCAAGTTGGGTGAGATCCATCAGGGAAGACAATGGGGGCGAAGACAACAGAATGGAAATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACATCGCCTGAGCAGAGGCCCACAATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTATTATTGGAGGATAGTGAATTGGACCTACCCAGTAGTAACGCCTTGCCTTAG 1959 0.5145 MVKRKQFDMWMLMLMLLLLSNTFCYCSKNGDHHLPPPDAAALLAFKSKADLNNRLNFSRHLYFCKWQGVECNNGTKVVHLLLRGLDLGGVFAPHTLSRLDQLRVLSLQNNSLTGPIPDLSGLFNLKTLFLDNNHFNGSLPPSLFSLHRLRTLDFSHNNLSGPIPVAFNNLDRIIYLSLSWNAFNGTVPPLNQSSLKTFNVSGNNLTGAIPVTPTLFRLQPSSFASNPGLCGEIIRRECRPTAPFFAPSSPPTVGLGQSAQVHGLIRQPYEKRHDRRAVIIGFSAGVFVLIGSLACFVVAIKKQRSKKGVSSSGSSIMASDAAATAEAAVVVQMEQERELEEKVKRAQVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGSLGTTYKAVLDNRLIVTVKRLDASKMAAHATKEVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLVHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLRSSNVLLGPDFEACITDYCLSVLTNPSVFDEEGDSAAYRAPETRNPNHQPTPKSDVYAYGILLLELLTGKSPSELPFMVPGDMSSWVRSIREDNGGEDNRMEMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSELDLPSSNALP 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00012 652 ProSiteProfiles Protein kinase domain profile. 371 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00012 652 Gene3D Ribonuclease Inhibitor 192 236 IPR032675 -
Sebi50g00012 652 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Sebi50g00012 652 SUPERFAMILY L domain-like 59 231 - -
Sebi50g00012 652 FunFam Nuclear pore complex protein NUP107 36 189 - -
Sebi50g00012 652 Gene3D Ribonuclease Inhibitor 37 191 IPR032675 -
Sebi50g00012 652 ProSiteProfiles Leucine-rich repeat profile. 101 123 IPR001611 GO:0005515
Sebi50g00012 652 Gene3D Phosphorylase Kinase; domain 1 335 449 - -
Sebi50g00012 652 Gene3D Transferase(Phosphotransferase) domain 1 451 642 - -
Sebi50g00012 652 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 633 IPR046959 -
Sebi50g00012 652 Pfam Protein kinase domain 375 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00012 652 SUPERFAMILY Protein kinase-like (PK-like) 375 635 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00012 Sebi-Chr50 196773 199985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00012 38 650 Receptor kinase-like Gene Family AT5G43020 60.222 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi50g00012 Pkinase 5.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00012 - - cam:101511242 1018.84