Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00005 ATGCATTTCCTAATTATCTTCCTTCTCCTTCTCCACTTTGCCTCAACTTCATTTGCGTCAATAGATACCCTCTCACAAGGCTCATCTCTTTCGGTTGACAAACCAAGTGATACTTTGGTTTCAGCCAACGGTGACTTCCAGGCGGGTTTCTTCCAAGTCGGGGATAACGCTTTCTGTTTCTCCGTTTGGTTCACAAGGTCCAAAAAACCCACCCTTGTTTGGATGGCAAACCGGGACCAACCCCTCAACAGTAAAAACTCACGATTATCACTCCAAAAAGATGGCAATCTCATTCTGATGGATGCAGACAGAACCACTATTTGGACTAGTGCTACCTTCTCCCCCTTGCGGTTGCAGTTGAAACTCATGAACAACGGCAACCTCGTTCTTACCACTCTACAAGGTACTGTCATTTGGCAAAGCTTTGACTCCCCTACAGATACTCTTCTTCCAGGTCAAGCCGTTACAGAGCGAGCAAGCCTTGTTTCATCAAGAAGCACAACAAACTATTCCTCCGGTTTCTATAAACTTTATTTTGACAACGACAATGTTATTCGCTTGCTCTTCAAAAGTCCTCTGCTATCTAGCGTCTACTGGCCAACCCTATGGAAGAACCCACTTGAGATGGGCAGATCCTCATACAACGTGACTAAAATCGCCGTCCTAGATTCTTCTGGCAAGTTCACATCCTCTGATGGCTACCAAATCCTTTCCACTGATTATGGGAAAAGACTGTATAGACTTCTCAAGATAGATCCTGACGGTAACTTGCGTCTCTACAGCTTCAACAAGGACCGTCAGATGTGGGAGGTATCATGGCAAGCCATTACCGATACATGTACCGTTCATGGCCTTTGTGGAGCTAACAGCATGTGCACTTATAATCCTGTTTCTGGAAGGACTTGCAACTGCTTACAAGGATATAAGGTTAAGAATCCCACTGACTGGACACAGGGTTGTGTGCCTGACTTTAACCCTTCTGTTTTCTCCTGCAATCACTCTAAGTCTCTGGATTTCCTCCATATTCCACACTCGGAATTCTACGGCTATGACTGGAACGTCACCCTCGTTACAAGCTTGAAGCAATGCCAAGATATATGCTTGGAGCTTTGTGATAAATGCATAGGTATCCAATTCAGCTTCAACCAATTGACTACGTCTATATATAATTGTTACCCTAAAACATTATTGCTCAATGGACGAGATTCCCCCAGCTTCACTGGACATATCTATCTGAAATTGCCAAAAGAGACTCTGCACTCTTTCAAAAAGCCTCTTAAAAAACACTCACCTTTGAACTGTTCCATTCGTTTGTCTCAACCCCTGAAAAGAATTTATCAAACTCCTGGAAAAAACTCCACTTTAAGTTTCTTGGTTTGGTTTGCTTCCGGGATGGGAGCCTTTGAGATGTCCATCATTTTCCTTGTTTGGTTCTTTTTGTTTAGAACCAGCAAGCAACCTGATGTAGAAGATCAACAACGGCACTTACTTTCAACTACAGGGTTTCAAAGGTTCACCTATGCAGAGCTGAAAACAGCCACAAAGGGATTCAGTGAGGAAATTGGGCGAGGAGCTGGAGGGGTTGTTTACAAAGGGACATTATGTGATTATGATAATCGCGTTGCGGCTATCAAACGCCTGAGCGAAGCTAATCAAGGAGAAGAAGAATTCCTTGCCGAAATTAGCACAATTGGCATGTTGAACCACATGAATTTGATTGACATGTGGGAATATTGTGTTGAGGGGAAACACAGGCTGTTGGTGTATGAGTATATGGAGCATGGATCCTTAGCACACAATCTTTTTTGTAACACACTTGATTGGAAGAAGAGGTTTGATATAGCTGTAGGTACAGCGAGAGGGCTATCTTATTTACATGAGGAGTGTTTGGAATGGGTTTTACATTGCGATGTGAAGCCTCAAAACATTCTGCTTGACTCTGATTTCCAACCGAAGGTAGCAGATTTTGGCTTATCAAAGCTTTTAAATAGAGATGGGCATGGAAATTCTGCTTTTTCTAGAATAAGAGGGACTCGAGGTTACATGGCTCCAGAGTGGGTATACAATCTTCGCATTACTTCTAAAGTGGATGTTTATAGCTATGGGATTGTTGTGTTGGAAATGGTAACAGGAAAGAGCCCAATGGAATTGCACAGTCTTGAGAATAGTACGGGCATAGAGCACCGTCGGTTGGTGACGTGGGTGACAAACAAGATAAACAGTGCATCCACAACCATGTTATGGAGTGAAGAGATAATTGATCCCAAACTGGAAGGCCGTTACGACATTTCGCAGCTTGAGATTTTGGTTAAAGTGGCTTTGCAATGTGTGCAAGATGACATGAATGAAAGACCATCCATGAGCCAAGTAGTGGAGATGCTCCAGCCTCCAGTCCCATGA 2400 0.4338 MHFLIIFLLLLHFASTSFASIDTLSQGSSLSVDKPSDTLVSANGDFQAGFFQVGDNAFCFSVWFTRSKKPTLVWMANRDQPLNSKNSRLSLQKDGNLILMDADRTTIWTSATFSPLRLQLKLMNNGNLVLTTLQGTVIWQSFDSPTDTLLPGQAVTERASLVSSRSTTNYSSGFYKLYFDNDNVIRLLFKSPLLSSVYWPTLWKNPLEMGRSSYNVTKIAVLDSSGKFTSSDGYQILSTDYGKRLYRLLKIDPDGNLRLYSFNKDRQMWEVSWQAITDTCTVHGLCGANSMCTYNPVSGRTCNCLQGYKVKNPTDWTQGCVPDFNPSVFSCNHSKSLDFLHIPHSEFYGYDWNVTLVTSLKQCQDICLELCDKCIGIQFSFNQLTTSIYNCYPKTLLLNGRDSPSFTGHIYLKLPKETLHSFKKPLKKHSPLNCSIRLSQPLKRIYQTPGKNSTLSFLVWFASGMGAFEMSIIFLVWFFLFRTSKQPDVEDQQRHLLSTTGFQRFTYAELKTATKGFSEEIGRGAGGVVYKGTLCDYDNRVAAIKRLSEANQGEEEFLAEISTIGMLNHMNLIDMWEYCVEGKHRLLVYEYMEHGSLAHNLFCNTLDWKKRFDIAVGTARGLSYLHEECLEWVLHCDVKPQNILLDSDFQPKVADFGLSKLLNRDGHGNSAFSRIRGTRGYMAPEWVYNLRITSKVDVYSYGIVVLEMVTGKSPMELHSLENSTGIEHRRLVTWVTNKINSASTTMLWSEEIIDPKLEGRYDISQLEILVKVALQCVQDDMNERPSMSQVVEMLQPPVP 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00005 799 Gene3D Phosphorylase Kinase; domain 1 481 591 - -
Sebi50g00005 799 SUPERFAMILY Protein kinase-like (PK-like) 492 794 IPR011009 -
Sebi50g00005 799 ProSitePatterns Protein kinases ATP-binding region signature. 521 545 IPR017441 GO:0005524
Sebi50g00005 799 PANTHER OS07G0415500 PROTEIN 4 795 - -
Sebi50g00005 799 SMART serkin_6 515 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00005 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 201 IPR036426 -
Sebi50g00005 799 CDD STKc_IRAK 521 796 - -
Sebi50g00005 799 ProSiteProfiles Bulb-type lectin domain profile. 15 143 IPR001480 -
Sebi50g00005 799 CDD B_lectin 38 145 IPR001480 -
Sebi50g00005 799 Gene3D Transferase(Phosphotransferase) domain 1 592 797 - -
Sebi50g00005 799 SMART blect_4 30 145 IPR001480 -
Sebi50g00005 799 ProSiteProfiles Protein kinase domain profile. 515 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00005 799 FunFam Serine/threonine-protein kinase 592 797 - -
Sebi50g00005 799 Pfam Protein kinase domain 518 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi50g00005 799 Gene3D - 17 143 IPR036426 -
Sebi50g00005 799 FunFam S-receptor-like serine/threonine-protein kinase 484 591 - -
Sebi50g00005 799 PIRSF SRK 1 798 IPR024171 GO:0004674
Sebi50g00005 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Sebi50g00005 799 Pfam S-locus glycoprotein domain 242 311 IPR000858 GO:0048544
Sebi50g00005 799 Pfam D-mannose binding lectin 71 158 IPR001480 -
Sebi50g00005 799 ProSiteProfiles EGF-like domain profile. 276 314 IPR000742 -
Sebi50g00005 799 CDD PAN_AP_plant 330 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00005 Sebi-Chr50 66334 68733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00005 482 798 Receptor kinase-like Gene Family AT3G58690 38.855 2.07e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi50g00005 Pkinase 6.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00005 - - gmx:100816469 1194.87