Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi50g00001 ATGAAGGTGCATCAATTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGGTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTCCTAACACAGACACAACCCCCACCATTCCTTTCGATCTTAAGAGCTTCATCAGACCAGAAAGTGGCCCCAGAAAACTCATTTCCTCTGATGATACTAAGAAAGATCCACCTAATTCACCCAACGGCCAGGTTGAAACGCATCCAGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAAGCATATTGGAGATGTTGTACAGAGGAGGGATGCGAACTCCAAATGCTCAACAGATAGAGCAGATCACAGCACAGCTTGGCAAGTACGGCAAGATCGAAGGGAAAAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGCCTTTCTCATAGTCCACGGACTCACACCATTCATACTATAACTTTAGAGACCACAAACACAACGGGGGAAGTACTAGTAGAAAGAGATGAGGAAGATAGTCCGTACAAGAAGTGTAGGAGATGGGTATTTGAGTGCTTGGAAGATCAACAAAGCAGGTTAACAGGAGGTAATAAAGAGGAGGAGGAACATAGAACTCTGGAGCTATTCCCATTGCACCCGGAAGGGAGATTATGA 681 0.4714 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLPNTDTTPTIPFDLKSFIRPESGPRKLISSDDTKKDPPNSPNGQVETHPGGTRWNPTQEQISILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTHTIHTITLETTNTTGEVLVERDEEDSPYKKCRRWVFECLEDQQSRLTGGNKEEEEHRTLELFPLHPEGRL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi50g00001 226 SMART HOX_1 79 146 IPR001356 GO:0003677
Sebi50g00001 226 MobiDBLite consensus disorder prediction 64 87 - -
Sebi50g00001 226 FunFam WUSCHEL-related homeobox 4 81 148 - -
Sebi50g00001 226 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Sebi50g00001 226 MobiDBLite consensus disorder prediction 28 87 - -
Sebi50g00001 226 Gene3D - 81 148 - -
Sebi50g00001 226 ProSiteProfiles 'Homeobox' domain profile. 77 142 IPR001356 GO:0003677
Sebi50g00001 226 MobiDBLite consensus disorder prediction 201 226 - -
Sebi50g00001 226 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Sebi50g00001 226 CDD homeodomain 82 143 IPR001356 GO:0003677
Sebi50g00001 226 MobiDBLite consensus disorder prediction 202 226 - -
Sebi50g00001 226 SUPERFAMILY Homeodomain-like 75 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi50g00001 Sebi-Chr50 20158 21282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi50g00001 1 148 Wox Gene Family AT1G46480 65.031 2.18e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sebi50g00001 Homeodomain 3.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi50g00001 - - gmx:100781015 355.14