Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi509g00004 ATGAAAGCTTTTAAATTATTTGGGAGAAAGCATGAAAAAAAGGGGTATCCAACCCCTCCATCCATCATTTGTGAGAAGCCTCTTAATTCATTCCCTACTTCAATAGAGAAAGACTCTCTGAAACACAGAAAGGTGAGGGAAGCATTGAAGACATTTAAGGACATATATTGCAAGCGTTATTGCCAGTTTAAAGAAGACAAACTTACTGGAAAATCAAAAACAAATACTCTACAGGAAGTAGCAATTTCAATGAGAATGAATCATCAATGGGTGAACACTATAAAGAGAATTGGACATGTGGATGGAATTGAAGTAGGTGATAAGTTCCAATATAGGGCTGAACTCTGTGTTATTGGCCTCCATAATCAGTTTTCAAGTGGTATTGATTACATGGGAAAGGATATGAACTCGTTGGCCACAAGCATTGTTGTAACCAGTCGCTATTCTAATGTTATGAAGTCCAATGGTTGCTTGGTTTACGAGGGTCAAGGAGGAAATCCTAAAGTAGGAAGTAATGTTTCACCCCATGATCAGAAATTAGAGGCAGGAAATCTGGCTTTGAAAAATAGCATGGAGGCTAGAAGTCCAGTGAGGGTGATATTGAAGGTTTGTAGAAAATCTGAATCTGATGGGATGGACACGTGGAGCAATCCTGAGTACTCATTTATATATGATGGATTGTATTTAGTGAACCAGATGACCCAAGAAAGGGGAGAATATGGAAAACTAGTATTCAAATTTACTTTGAACAAAATGCCAGACCAGCCCACACATGTTGCTCCTGAGAATGTGGTTATGGATGGACAATTTGCAAGTTCTAGACGCAAATCTAAAGGATCTGTAGCACAAAAGCATATTGTTCGTGTGAATGATGTTTCAAATGGCAAAGAAAAGTTTCCTATTCGAGTGGTGACTCCAATTGATCATGGTCAAATGCCTGCATCATTTGAATACATGGTAAACCTTGTTTATGGAGATAGGTTAAATCAACCAATTTTATTTGGTTGTGATTGTAGAGAGTCATGTATTGACTGTAAGAAGTGTAGTTGCATTGTTAAGAACGGTGGAACAATGCCATATAACTGTAACAAGAGACTAGCTTATCCTAATAAATCTTCCCTTATATATGAGTGTGGCCCTTCTTGCAAGTGCTCCTCATCTTGCATTAACCGAGTAAGTCAGTGTGGCATTCAGGTCCAGTTAGAAATCTTCAAGACAGAATATAAGGGTTGGGGTGTTAGAACACGCTCTTTCATACGAAGGGGATGCTTTGTGTGTGAGTTTATTGGAGAAGTCTATCACATTCACAATAGAAAAGCTAGATCAAGACCTGTCGCCGATGATGACTTCATATTAAGCATAGGTGTTGGCAAGGGTTTCATTGATGCAACTAACCGTGGAAACATTGCAAGATTTATAAATCATAGCTGTACTCCTAATCTTTGCTTCAAAGATGTTATCTATGATTCCAATAATAAGAGCATTCCCCATAAAATGTTGTTTGCGGTGAAGGACATACCTTCCGGTAGGGAGCTGACTTATAATTATAATAGCTGTAAGGGAAAGATTATCAAGGTTAGGAACAATGACTGCTATTGTGGTTCACGGGAATGTAATGGACAGATTTACTTTTGA 1635 0.3823 MKAFKLFGRKHEKKGYPTPPSIICEKPLNSFPTSIEKDSLKHRKVREALKTFKDIYCKRYCQFKEDKLTGKSKTNTLQEVAISMRMNHQWVNTIKRIGHVDGIEVGDKFQYRAELCVIGLHNQFSSGIDYMGKDMNSLATSIVVTSRYSNVMKSNGCLVYEGQGGNPKVGSNVSPHDQKLEAGNLALKNSMEARSPVRVILKVCRKSESDGMDTWSNPEYSFIYDGLYLVNQMTQERGEYGKLVFKFTLNKMPDQPTHVAPENVVMDGQFASSRRKSKGSVAQKHIVRVNDVSNGKEKFPIRVVTPIDHGQMPASFEYMVNLVYGDRLNQPILFGCDCRESCIDCKKCSCIVKNGGTMPYNCNKRLAYPNKSSLIYECGPSCKCSSSCINRVSQCGIQVQLEIFKTEYKGWGVRTRSFIRRGCFVCEFIGEVYHIHNRKARSRPVADDDFILSIGVGKGFIDATNRGNIARFINHSCTPNLCFKDVIYDSNNKSIPHKMLFAVKDIPSGRELTYNYNSCKGKIIKVRNNDCYCGSRECNGQIYF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi509g00004 544 ProSiteProfiles Post-SET domain profile. 527 543 IPR003616 -
Sebi509g00004 544 Gene3D SET domain 268 526 IPR046341 -
Sebi509g00004 544 ProSiteProfiles SET domain profile. 399 517 IPR001214 GO:0005515
Sebi509g00004 544 SUPERFAMILY PUA domain-like 83 259 IPR015947 -
Sebi509g00004 544 ProSiteProfiles Pre-SET domain profile. 334 396 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi509g00004 544 SMART G9a_1 93 255 IPR003105 -
Sebi509g00004 544 SMART set_7 399 523 IPR001214 GO:0005515
Sebi509g00004 544 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 35 537 - -
Sebi509g00004 544 Gene3D - 79 267 IPR036987 -
Sebi509g00004 544 ProSiteProfiles YDG domain profile. 98 251 IPR003105 -
Sebi509g00004 544 Pfam Pre-SET motif 293 391 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi509g00004 544 Pfam SAD/SRA domain 97 255 IPR003105 -
Sebi509g00004 544 SUPERFAMILY SET domain 282 525 IPR046341 -
Sebi509g00004 544 SMART preset_2 289 383 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi509g00004 544 Pfam SET domain 410 517 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi509g00004 Sebi-Chr509 59856 61566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi509g00004 79 542 Su(var)3-9 homologs AT1G73100 36.040 2.68e-88 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi509g00004 SAD_SRA 8.6e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi509g00004 - - gmx:100807574 609.372