Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi506g00033 ATGTCTTTTATTGGCACCCAACAAAAGTGCAAGGCTTGTGACAAAACGGTCTATCCAGTTGATCAGCTATCTGCTGATGGTGTTGCTTACCATAAAGCTTGTTTCAAGTGCTCTCACTGCAAAGGAACGTTAAAGTTGAGCAACTATTCCTCGATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAAACAGGCACTTTTAAGAAGAATTTCCAGTCACCTGCAAAGCTAGCTGACAAGACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGTATGTTTTCCGGGACACAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGACTACAAGAGTAAGTGTTCACTGTTCAGACCTTAAGGATGAGGATCTTTACTACAATCCACATCTAGATCCAGTAGATTAA 441 0.4218 MSFIGTQQKCKACDKTVYPVDQLSADGVAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFKKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKTTRVSVHCSDLKDEDLYYNPHLDPVD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi506g00033 146 Pfam LIM domain 10 65 IPR001781 -
Sebi506g00033 146 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Sebi506g00033 146 FunFam LIM domain and actin-binding 1 4 74 - -
Sebi506g00033 146 PANTHER OS06G0237300 PROTEIN 5 124 - -
Sebi506g00033 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Sebi506g00033 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Sebi506g00033 146 CDD LIM1_SF3 6 68 - -
Sebi506g00033 146 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Sebi506g00033 146 Gene3D Cysteine Rich Protein 4 74 - -
Sebi506g00033 146 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi506g00033 Sebi-Chr506 718065 719083 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi506g00033 LIM 1.5e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi506g00033 K09377 - gmx:100809121 247.669