LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi506g00029	ATGTGTAGATCTCTAAAGAACTTCATCGAAGCTTGGAATCCGTTGCAGCTTCCGCCGAGCGTAGAAGAAGGAGAACGAGAACGAGAACGAAGCAGTTCGTGCATCGTCAACCATATCAAAATGGTTAAAGGACGCCAAGGAGAGCGCGTTAGGCTTTACGTTAGAGGTTCAATTCTTGGATACAAGAGATCCAAGTCAAATCAATACCCAAACACCTCTCTTATCCAGATTGAGGGAGTAAACTCCAAGGAAGAGGTCTCATGGTACAGTGGGAAGCGTATGGCATACATTTACAAAGCCAAGGTAAAGCAGAATGGAACTCATTATCGCTGCATTTGGGGTAAGGTTATCAGGCCTCATGGTAACAGTGGTATAGTCCGTGCTAAGTTCAAGTCGAATCTGCCACCAAAATCAATGGGAGCAAGAGTTAGAGTCTTTATGTATCCAAGCAACATATGA	459	0.4423	MCRSLKNFIEAWNPLQLPPSVEEGERERERSSSCIVNHIKMVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIEGVNSKEEVSWYSGKRMAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI	152

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi506g00029	152	SUPERFAMILY	Translation proteins	52	146	IPR009000	-
	Sebi506g00029	152	FunFam	60S ribosomal protein L35a	46	152	-	-
	Sebi506g00029	152	Hamap	50S ribosomal protein L35Ae [rpl35ae].	54	146	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Sebi506g00029	152	ProSitePatterns	Ribosomal protein L35Ae signature.	114	135	IPR018266	GO:0003735\|GO:0005840\|GO:0006412
	Sebi506g00029	152	Gene3D	translation elongation factor selb, chain A, domain 4	26	152	IPR038661	-
	Sebi506g00029	152	PANTHER	60S RIBOSOMAL PROTEIN L35A	42	152	IPR001780	GO:0003735\|GO:0005840\|GO:0006412
	Sebi506g00029	152	Pfam	Ribosomal protein L35Ae	52	146	IPR001780	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi506g00029	Sebi-Chr506	660819	662556	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi506g00029	41	152	Cytoplasmic Ribosomal Protein Gene Family	AT1G07070	88.393	4.04e-73	213

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi506g00029	K02917		-	oeu:111397835	228.024

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