Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi506g00026 ATGGTGGTTACTGAGGATAAGTTTCATGTTGTTGTTGACATAATAGACAATAATGGCTGTCACCGGAGCTCCTCCGCCGGCGGCGGAGACGGCACTGAAGGGTGTTCTGACGCCGGCGACCGGTCAGATGAGGAGCAAAGGTCCTCCTCCCAGGATTCTTGTACCGAGATTGTGGGAGAGTGTGAGAAAGAGAGAAGATCCTCTGCATCAGAGTGTTCTGTTGAGGTGGATCTGGATGGTGCAGTCCCTGATGTTAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAATGTGCTGAGGCTTGGTTTAAGATCAAGGGCAACAAGTAA 429 0.5012 MVVTEDKFHVVVDIIDNNGCHRSSSAGGGDGTEGCSDAGDRSDEEQRSSSQDSCTEIVGECEKERRSSASECSVEVDLDGAVPDVKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi506g00026 142 Pfam RING-variant domain 96 139 IPR011016 GO:0008270
Sebi506g00026 142 MobiDBLite consensus disorder prediction 22 56 - -
Sebi506g00026 142 SUPERFAMILY RING/U-box 93 141 - -
Sebi506g00026 142 SMART ringv_2 95 142 IPR011016 GO:0008270
Sebi506g00026 142 PANTHER ZINC FINGER, RING-CH-TYPE 19 142 - -
Sebi506g00026 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 142 IPR013083 -
Sebi506g00026 142 ProSiteProfiles Zinc finger RING-CH-type profile. 88 142 IPR011016 GO:0008270
Sebi506g00026 142 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi506g00026 Sebi-Chr506 526590 527018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi506g00026 62 142 C3H Transcription Factor Family AT5G05830 70.370 2.51e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi506g00026 - - gmx:100818979 198.749