LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi506g00005	ATGGACTATGGAAAAGATGACATCATATCTCCTAGGGATTCGGAAGGGCATGGGACTCATTGTGCCTCTATTGTTGCTGGAAACTCTATTAAATCTGCAAGTCTATATGGGCTTGCCTCAGGGATAGCAAGAGGAGGAGTTCCATCTGCACGTATTGCTGTATACAAACCATGTTGGTCATTGGGTTGTGAAGAAGCTGACATCCTTGCAGCATTTGATGAAGCCATTGCAGATGCTAGCACTATAGACATGAAGTTTTTCACCAAGGTTCGGTTGGGTGATGGAACCATCTATCAGGGAGTTTCAGTAAATACATTTGATCTTAAAAATGTAAGCTATCCTTTAATTTATGCTGGAGTTGCACCCAATATCACTGGTGGATATAATAGTTCCATATCCAGTTCCTCTCCAAAAGATGTGGCATTTACATTTTCACTGCCAGCGATTCACCTTAGTGAAAATGATGGGGAACTCATACACTCCTACATAAATTCAACGAGGGGTCCAAATGCAGTAACTCCAGACATTCTCAAGCCTGATCTAGCCGCTCCTGGAGTTGACATTCTAGCTGCATGGTCTCCAATTGCTCCTGTTTCCAGGGTTAAAGGTGATACTAGAGTATCAAACTACAACATATTGTCTGGAACTTCTATGGCATGCCCTCATGCTACTGCAGCGGCTGCCTACGTCAAATCATTTCATCCCAATTGGTCACCTGCAGCAATCAAATCTGCACTAATGACCACTGCCACTCGTATGAGTGCCACACTTAATCCTGAAGCTGAATTTGCTTATGGTGCTGGGCAAATTGATCCCATCAAGGCAGTGAATCCTGGATTAGTATATGATGTTGGTGAAATTGATTATGTTAAGTTTCTATGTGGACAAGGTTATGATACCAAAAAGTTGCGAACCATCACTGATGATGATAGCAGTTGTACACCATCCAACAATGGAACTGCTTGGGACTTGAATCTCCCATCTTTTACTCTTTCCACAAATGGCTCAAGATCTTTTAGTCGCATTTTCCATAGAACTGTTACACATGTTGGATCTACTACATCAAGGTATAAGGCTAAAATAACTGTACCTTTATCTTCAATAAGCATCAAAGTGGAGCCAGATGTTTTGTCCTTCTCATCGATGGGTGAGAAGAAGTCATTTACTATTAGGATTAACGGGACCATTAATGTGGGAATGGTTTCTTCTTCTTTGGTTTGGGATGATGACATTTTTCAAGTAAGAAGCCCCATTGTTGTTTACATTGGATAA	1272	0.4127	MDYGKDDIISPRDSEGHGTHCASIVAGNSIKSASLYGLASGIARGGVPSARIAVYKPCWSLGCEEADILAAFDEAIADASTIDMKFFTKVRLGDGTIYQGVSVNTFDLKNVSYPLIYAGVAPNITGGYNSSISSSSPKDVAFTFSLPAIHLSENDGELIHSYINSTRGPNAVTPDILKPDLAAPGVDILAAWSPIAPVSRVKGDTRVSNYNILSGTSMACPHATAAAAYVKSFHPNWSPAAIKSALMTTATRMSATLNPEAEFAYGAGQIDPIKAVNPGLVYDVGEIDYVKFLCGQGYDTKKLRTITDDDSSCTPSNNGTAWDLNLPSFTLSTNGSRSFSRIFHRTVTHVGSTTSRYKAKITVPLSSISIKVEPDVLSFSSMGEKKSFTIRINGTINVGMVSSSLVWDDDIFQVRSPIVVYIG	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi506g00005	423	Pfam	Fibronectin type-III domain	323	420	IPR041469	-
	Sebi506g00005	423	SUPERFAMILY	Subtilisin-like	4	280	IPR036852	GO:0004252\|GO:0006508
	Sebi506g00005	423	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	17	27	IPR022398	-
	Sebi506g00005	423	ProSitePatterns	Serine proteases, subtilase family, serine active site.	215	225	IPR023828	-
	Sebi506g00005	423	Gene3D	-	293	422	-	-
	Sebi506g00005	423	Pfam	Subtilase family	165	268	IPR000209	GO:0006508\|GO:0008236
	Sebi506g00005	423	Gene3D	Peptidase S8/S53 domain	165	289	IPR036852	GO:0004252\|GO:0006508
	Sebi506g00005	423	Gene3D	Peptidase S8/S53 domain	5	78	IPR036852	GO:0004252\|GO:0006508
	Sebi506g00005	423	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	276	-	-
	Sebi506g00005	423	PRINTS	Subtilisin serine protease family (S8) signature	214	230	IPR015500	-
	Sebi506g00005	423	PRINTS	Subtilisin serine protease family (S8) signature	13	26	IPR015500	-
	Sebi506g00005	423	Pfam	Subtilase family	10	79	IPR000209	GO:0006508\|GO:0008236
	Sebi506g00005	423	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	79	420	IPR045051	-
	Sebi506g00005	423	Gene3D	-	83	135	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi506g00005	Sebi-Chr506	146315	149968	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi506g00005	10	78	Subtilisin-like Serine Gene Family	AT3G46850	60.563	1.83e-18	85.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi506g00005	-		-	gmx:100800042	551.592