Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi505g00001 ATGGGATTGAAGAAATGTGGTAAACACATTTTGTTTTGCAACAAGTGGGAAGAGTTTGTGGAATCCTATTCTATCAGTTATGGTTGCCACCTAGTTTTCAAATATGAAGGGAAATCAAAGTTTAATGTTCTCATATTTGATGCAACTTCTGTTGAGATTTACTATCCATGCAAAGACATGCACCCAAAGTTTCCTAGGATAAGGGCCACGGTTGATCATCAGGACTCTAGCCATCAGACAAGAATGTCAAACTCTGCTTCCAAAAGAGCAAAGGATGCTGCTTCTGCTTCCAATAAAGAGCCAAAAAAACCTTATTTTACTTCAACCTTAAAGAGACAACGTCTGTATGTTCCTGTTGAATTTGCTCAAAAGTATCTCAAGCCAAATGTTCCTATAAAGCTCCAAACTTCTAGTAGAGAGCAGTGGGATGTTTCTTGCGTAAAACATTGTGCCAAGGCAATGATAATGGCAAAGGGAATCCCTAAATTTGCTAGAGAAAACAAACTCTCAGAAGGAGATTCCTTTGTGCTTGAGTTGATCAAGAGGGAGCCACTTGTCCTAAAAGTTACACCATCTCGAGCAGTTGAATATGGCAATTCACGCAGGTGCTGA 612 0.3954 MGLKKCGKHILFCNKWEEFVESYSISYGCHLVFKYEGKSKFNVLIFDATSVEIYYPCKDMHPKFPRIRATVDHQDSSHQTRMSNSASKRAKDAASASNKEPKKPYFTSTLKRQRLYVPVEFAQKYLKPNVPIKLQTSSREQWDVSCVKHCAKAMIMAKGIPKFARENKLSEGDSFVLELIKREPLVLKVTPSRAVEYGNSRRC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi505g00001 203 MobiDBLite consensus disorder prediction 71 103 - -
Sebi505g00001 203 SUPERFAMILY DNA-binding pseudobarrel domain 4 56 IPR015300 -
Sebi505g00001 203 ProSiteProfiles B3 DNA-binding domain profile. 1 49 IPR003340 GO:0003677
Sebi505g00001 203 SMART B3_2 101 195 IPR003340 GO:0003677
Sebi505g00001 203 Gene3D - 1 50 IPR015300 -
Sebi505g00001 203 PANTHER B3 DOMAIN-CONTAINING 2 183 - -
Sebi505g00001 203 MobiDBLite consensus disorder prediction 76 92 - -
Sebi505g00001 203 ProSiteProfiles B3 DNA-binding domain profile. 100 193 IPR003340 GO:0003677
Sebi505g00001 203 SUPERFAMILY DNA-binding pseudobarrel domain 101 190 IPR015300 -
Sebi505g00001 203 Pfam B3 DNA binding domain 108 189 IPR003340 GO:0003677
Sebi505g00001 203 CDD B3_DNA 104 190 IPR003340 GO:0003677
Sebi505g00001 203 Gene3D - 62 198 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi505g00001 Sebi-Chr505 13129 13846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi505g00001 69 197 REM Transcription Factor Family AT1G49480 33.103 7.56e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi505g00001 B3 1.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi505g00001 - - mtr:25488444 186.037