Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi504g00024 ATGCCAGCTGGTATTATGATTCCGGCGAGAAACATGCCCTCCATGATTGGAAGAAACGGCACCGTTGGTGGATTTGGATTATCTTCAGGACTCTCTCTTGGTCAGCAGCCAAACCTAATGGAAGGTGGTCATCTCCTCCCACTGGATCACATGGCTCAGAACACAACCTCAGAGAGTGATATCCCCAGAATCCGTGAAGATGAGTTCGTTGACAGTGCCACAAAGTCAGGTAGTGAAAACCAGGAAGGTGCTTCAGGTGAAGACCAAGACCCTCGTCCCAATAAGAAGAAGCGTTACCACCGCCACACACAGCATCAGATCCAGGAAATGGAAGCGAAGGAACTGAGCCGAGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAGAGGCATGAGAACACACAGCTTAGAACTGAGAATGAGAAGCTTCGTGCGGATAACATGAGGTTCAGGGAAGCTCTTAGCAATGCCTCTTGTCCTAATTGTGGTGGACCAACAGCTATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTAAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCCAAGTATGTAGGAAAGCCTGTGGGAAGCTATCCACTTCTTTCATCACCTTCATCTGTTCCTCCTCGTCCTCTTGAGCTTGGGATAGGTGGTGGTTTTGGTGGCCAACCTGGAGGAGGCATTGGTGGTGGAGATATGTATGGAGCTGGAGATCTTCTTAGGTCAATTAGTGGACCCACTGAAGCTGATAAACCAATAATAATTGAGCTAGCTGTTGCAGCTATGGAGGAGCTAATTGGAATGGCACAAATGGGTGAGCCACTTTGGTTAACCACCTTGGATGGCACAACCACTGTGCTCAATGAGGATGAATACATCAGGTCCTTTCCTAGAGGAATTGGACCAAAGCCTGCTGGATTCAAGTGTGAAGCTTCAAGAGAAACCGCTGTTGTCATCATGAATCATGTTAGCCTTGTTGAGATTCTCATGGACACGAATCAATGGTCCACAGTGTTCTCTGGAATAGTCTCAAGAGCAATGACTCTAGAAGTGCTATCAACTGGTGTGGCGGGGAACTATAATGGCGCATTGCAAGTGATGACAGCAGAACTTCAAGTACCTTCACCTCTTGTGCCAACCCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGGACTTGGGCAGTGGTTGATGTGTCTTTGGATAATTTGCGCCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTGATATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAGTCTCTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGTCAATGTGAAAGGCTTGCTAGTGCCATGGCTACAAACATTCCCACCGTAGATGTTGGGGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACTGCTCATACATGGACAACACTTTCTGGGACTGGTGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCTGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCACCCAAAAGAGTTTTTGAATTCCTCCGAGATGAGAACTCTAGAAGTGAGTGGGATATCCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACATATTGCTAACGGCCGAGATACCGGGAATTGTGTCTCTCTTCTTCGAGTTAATAGTGCCAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAGTTGCACCGACTCAACAGGCTCTTTTGTTATATATGCTCCTGTAGACATTGTAGCAATGAATGTGGTTCTAAATGGAGGGGACCCAGATTATGTAGCCCTTCTCCCTTCAGGGTTTGCTATACTCCCAGATGGGACCACATCACATGGTGGTGGCATTGGTGAAACTGGACCTTGTGGATCTCTCTTGACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCCAAGCTTTCTCTTGGATCTGTTGCTACAGTTAACAATCTCATTGCATGCACTGTTGATAGAATCAAGGCTTCACTATCTGGTGAAGTTGCTTGA 2274 0.46 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGQQPNLMEGGHLLPLDHMAQNTTSESDIPRIREDEFVDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVGSYPLLSSPSSVPPRPLELGIGGGFGGQPGGGIGGGDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVSLVEILMDTNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGGGIGETGPCGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKASLSGEVA 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi504g00024 757 Pfam Homeodomain 103 138 IPR001356 GO:0003677
Sebi504g00024 757 SUPERFAMILY Bet v1-like 269 500 - -
Sebi504g00024 757 Gene3D - 96 147 - -
Sebi504g00024 757 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Sebi504g00024 757 SUPERFAMILY Bet v1-like 518 749 - -
Sebi504g00024 757 Pfam START domain 279 498 IPR002913 GO:0008289
Sebi504g00024 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 752 IPR042160 -
Sebi504g00024 757 SMART START_1 278 498 IPR002913 GO:0008289
Sebi504g00024 757 SMART HOX_1 94 144 IPR001356 GO:0003677
Sebi504g00024 757 SUPERFAMILY Homeodomain-like 85 140 IPR009057 -
Sebi504g00024 757 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Sebi504g00024 757 Gene3D - 329 495 IPR023393 -
Sebi504g00024 757 MobiDBLite consensus disorder prediction 72 106 - -
Sebi504g00024 757 ProSiteProfiles 'Homeobox' domain profile. 96 140 IPR001356 GO:0003677
Sebi504g00024 757 CDD START_ArGLABRA2_like 273 497 - -
Sebi504g00024 757 FunFam Homeobox-leucine zipper protein GLABRA 2 278 497 - -
Sebi504g00024 757 Coils Coil 146 166 - -
Sebi504g00024 757 CDD homeodomain 96 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi504g00024 Sebi-Chr504 675149 679802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi504g00024 64 757 Homeobox Transcription Factor Family AT1G05230 77.809 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi504g00024 START 8.8e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi504g00024 K09338 - gmx:100809556 1335.47