Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi504g00011 ATGGCTGCTGTGACTGGGGTGTTTGATGCTGTGAAAAATATATATCGTGGGAAAGAGACATGGAGGCTTAAGGTCCGTGTTGTAAGGATGTGGGTTATTTGTGCAAAGGAAAATCCCTCTAATGTTTTCTCGGTTGAGATGGTTTTGGTGGATGCAGAGGGTGGAAGAATTCAAGCAAGCATTAGGAAAGCTATGCTCAAGAAATTCATGGGTAACGTGGTTGAGGGTGATGTCTATAAGATGACCTTTTTTGGTGTCATTGACAATCTTGGAACTTATAGGGCAACTACCCACGAGTGCAAGCTGCTATTCCAGCCTAGGACCAAGGTTTATCCTTGTGAGAGTGAGGTAATATCAAGGTTTGGGTTGGATGTCAAGACTTCGGAGGAAATTCATCAAACAAGTGGTGATTCTGAATATTTGTTTGATTTCATGGGTGTCTTGACTGTTGTTGGTGAAGAAAAACAGTGTGAAAAGTTCAATAGAACTATAAGGGTGCTTGAGTTGGAGCTCACTGATGACAAGGGTGTTGTTAGGTGCTCTTTGTTTGGGCATTTCATTGACCTCATGAAAGATTACTTGAAGAATCGTTCTGTTGATGAGCTTGATATTTTGGTCATCCAGTTTGCTAGGCTTAAGAGTTACATGGGTAAGAATTCTTTGCACACTTTGAGTAACTCCACAAGGGTTCTTTGGAATCCTCATATTCAAGAGGCTGTTTCTTTTAAGAATGGCGTTGCGTTTCATGGCTTTGATTTGCATGCCCCCATGAAGATGATTGGTGGAAATGACCGGCCATATACACTTAGGGAGGAGTTCATCAATCATTTTCCTAGGAAAACTATTGAGGATCTACAACTTATGGAGGAGGCAGTCAATTATGATGATGATACTGATACATATTACTGTGTTGGGTGTGAGGCAAATGTTACTGATGTTACTCCTAGGTTTAGGTTGAGGTTGGATGTTAGTGATATTACTGAAAAGGCTGAATTTGTCATCTTTGATTATGATGCCTCTTTTTTGCTCTGCAAGACATGTGCATCAATGGTTGGGGATGCACTGTTCCCATCTCTTCAATATCCAGATGACTTTAATGTGCTTATTGGCAAGGAAGTTCTCTTTAAAGTAAAAGTTAAAGAGGACTGTGCCTTTAAATGGGATGATTCTTTTAAGATTAAAAAAGTGTGTACTGATGAGGATATTATTAAGGAATTTAAGCAGGATTTTTCAATCAAGACCCCTGAGAAGTCTACCTTCAAGACATCTCTGAGTGAGCATCCTGGTGAAGAGTTACCTGCGGAGGGAGGTGCAGATGCGAGTATTGTAATTGATTTGATTGATGTGTGTAATGGTGGTGAGTTGACTCCAATTCTGTTGGAGATTCCTCCAATGTTGTTGCCTGTTTGGCTCCTCAGAAGCGTAAGGCTACTTCTCGGGTTGAACGAGCTCCAATCAACAAGAAAAAGGGTCTTGGGAAACCTGTGA 1488 0.4093 MAAVTGVFDAVKNIYRGKETWRLKVRVVRMWVICAKENPSNVFSVEMVLVDAEGGRIQASIRKAMLKKFMGNVVEGDVYKMTFFGVIDNLGTYRATTHECKLLFQPRTKVYPCESEVISRFGLDVKTSEEIHQTSGDSEYLFDFMGVLTVVGEEKQCEKFNRTIRVLELELTDDKGVVRCSLFGHFIDLMKDYLKNRSVDELDILVIQFARLKSYMGKNSLHTLSNSTRVLWNPHIQEAVSFKNGVAFHGFDLHAPMKMIGGNDRPYTLREEFINHFPRKTIEDLQLMEEAVNYDDDTDTYYCVGCEANVTDVTPRFRLRLDVSDITEKAEFVIFDYDASFLLCKTCASMVGDALFPSLQYPDDFNVLIGKEVLFKVKVKEDCAFKWDDSFKIKKVCTDEDIIKEFKQDFSIKTPEKSTFKTSLSEHPGEELPAEGGADASIVIDLIDVCNGGELTPILLEIPPMLLPVWLLRSVRLLLGLNELQSTRKRVLGNL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi504g00011 495 Gene3D - 279 406 IPR012340 -
Sebi504g00011 495 Gene3D - 118 250 IPR012340 -
Sebi504g00011 495 Pfam Domain of unknown function DUF223 46 115 IPR003871 -
Sebi504g00011 495 CDD RPA1_DBD_B_like 143 243 - -
Sebi504g00011 495 SUPERFAMILY Nucleic acid-binding proteins 296 394 IPR012340 -
Sebi504g00011 495 SUPERFAMILY Nucleic acid-binding proteins 130 251 IPR012340 -
Sebi504g00011 495 Gene3D - 9 115 IPR012340 -
Sebi504g00011 495 CDD RPA1_DBD_A_like 22 110 - -
Sebi504g00011 495 SUPERFAMILY Nucleic acid-binding proteins 9 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi504g00011 Sebi-Chr504 317640 320094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi504g00011 10 254 Core DNA Replication Machinery Family AT5G45400 21.429 3.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi504g00011 - - lja:Lj6g3v0884310.1 335.88