Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi504g00004 ATGAAAAAGGGGCCTTGGACCCCACAAGAAGATAAGGTTTTGATCGAGTACGTGAATAAGCATAATGAAAGGAATTGGAACGCTGTGCAGAAGAATTTCGGGTTATTAAGGTGTGGAAAAAGTTGCAGACTTAGGTGGGCTAATCATCCAAGGCCTAATCTAAAGAAAGGATCTTTTTCTCAAGAAGAAGAAACAATCATCATTGATCTTCATGCCAAAATTGGAAACAAATGGCTCGAATGGCCTCACAAGTATCTCTTATAG 264 0.3939 MKKGPWTPQEDKVLIEYVNKHNERNWNAVQKNFGLLRCGKSCRLRWANHPRPNLKKGSFSQEEETIIIDLHAKIGNKWLEWPHKYLL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi504g00004 87 SMART sant 2 52 IPR001005 -
Sebi504g00004 87 Gene3D - 2 55 - -
Sebi504g00004 87 Pfam Myb-like DNA-binding domain 3 49 IPR001005 -
Sebi504g00004 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Sebi504g00004 87 SUPERFAMILY Homeodomain-like 4 79 IPR009057 -
Sebi504g00004 87 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Sebi504g00004 87 CDD SANT 5 49 IPR001005 -
Sebi504g00004 87 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 78 - -
Sebi504g00004 87 FunFam MYB-related transcription factor 2 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi504g00004 Sebi-Chr504 77291 77554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi504g00004 1 78 MYB Transcription Factor Family AT2G32460 79.487 6.00e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi504g00004 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi504g00004 K09422 - gmx:100798860 143.28