Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi502g00019 ATGGGGTTCGAAGCCCGGGAGCGGTGGCGCCGCCTCGGCTCAGAACGAAGCCATCGACCCTACGAATGCAAACTCTGCCTCACTCTTCACAACAACGAGGGCAACTACTTGGCCCACACGCAGGGCAAGCGCCATCAGACCAATTTAGCCAAACGTGCAGCTCGCGAGGCCAAAGACGCTCCCGCTCAACCTCAACCTCACAAGCGCAAAGTCTCCGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGCTACCGGGTGACTAAGCAATATGATCCAGAGACAAAGCAAAGATCTCTTCTGTTTCAGATTGAATATCCTGAGATTGAAGACAATATGAAGCCAAGGCACCGATTCATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTTTTATTTGCTGCGGAACCATATGAAATAGTTGCATTCAAGGTACCTAGCACAGAGATTGACAAGTCAACTCCAAAGTTTTTCTCACACTGGGACCCAGACTCAAAGATGTTCACACTGCAGTTGTATTTTAAATCCAAGCCACCAGAGGCAACCAAACCACAGCCTGCCTCTACAGCCAATGGTGCAGCAGCACCAGGATCGTTGCCACCTCCACCTCCCATGGGAGTAAATGGTCCTAGACCCGCACCTCCTGGTGGAATGCCATCTATCCCACCCCCACCCCCTCTTGGCAGTGGCACAGCAAGTTTCAACATGGGTTCAAGGCCTCCATTAATGCCACCTCCGCAAGGTCCTCAGTTCACATATACTTATGTGCATAAGGCTTGTGTTGTTTCAGAGACTGGCCCGCACTGGAAGGGTCTTACTGCATTGGAACAGGGGAAGTTGTTTCATGGCTATATCCTTAGATGGGGTCTTGATTCTATCCTGCCCGTTCTTAACACCCTTATAACAATTCATACATGCCTTGTTGAGGAGGAAATGTTTTATTTGAATCTATGCTTACCAAGTACAGGATCCATCCAGGCATGGAGCATTATGCTTGTGTGGATTCACTGTAATGTTGAGATCGCAGAGAGAGCAAGCGCTATGCTTTTTGAGTTGGAGCCGATGAACGCTGGCAATTATGTTCTATTAGCAGAATTTATGTAG 1119 0.4844 MGFEARERWRRLGSERSHRPYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDNMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEATKPQPASTANGAAAPGSLPPPPPMGVNGPRPAPPGGMPSIPPPPPLGSGTASFNMGSRPPLMPPPQGPQFTYTYVHKACVVSETGPHWKGLTALEQGKLFHGYILRWGLDSILPVLNTLITIHTCLVEEEMFYLNLCLPSTGSIQAWSIMLVWIHCNVEIAERASAMLFELEPMNAGNYVLLAEFM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi502g00019 372 Pfam Zinc-finger of C2H2 type 21 45 - -
Sebi502g00019 372 MobiDBLite consensus disorder prediction 201 234 - -
Sebi502g00019 372 SUPERFAMILY beta-beta-alpha zinc fingers 18 51 IPR036236 -
Sebi502g00019 372 SMART CactinC_cactus_3 58 186 - -
Sebi502g00019 372 MobiDBLite consensus disorder prediction 54 73 - -
Sebi502g00019 372 PANTHER SPLICING FACTOR 3A SUBUNIT 2 21 268 - -
Sebi502g00019 372 MobiDBLite consensus disorder prediction 183 248 - -
Sebi502g00019 372 ProSiteProfiles Zinc finger matrin-type profile. 21 51 IPR000690 GO:0003676|GO:0005634|GO:0008270
Sebi502g00019 372 FunFam Splicing factor 3a subunit 2 63 187 - -
Sebi502g00019 372 Gene3D - 62 187 - -
Sebi502g00019 372 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 79 173 IPR031781 -
Sebi502g00019 372 Gene3D Classic Zinc Finger 13 58 - -
Sebi502g00019 372 SMART ZnF_U1_5 18 52 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi502g00019 Sebi-Chr502 528787 533570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi502g00019 21 197 C2H2 Transcription Factor Family AT2G32600 87.571 2.22e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi502g00019 K12826 - gmx:100818114 357.836