Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi501g00017 ATGGAAGAAGCCGTTGTGGTGAATAAAGGAGATGAAGCTCTAGATTTGCCTCCAGGTTTCAGGTTCCATCCTACTGATGAGGAAATCATCACTTGTTATCTAACAGAGAAGGTGTTGAATAGCAATTTCAGTGCAATTGCTATTGGAGAAGCTGATCTAAACAAGTGTGAGCCTTGGGACTTACCCAAGATAGCCAAGATGGGTGAGAAAGATTGGTACTTTTTCTATCAAAGAGATAGAAAGTATCCAACTGGTACGAGAACCAATAGAGCAACTCAATCTGGGTATTGGAAAGCCACTGGAAAAGATAAAGAAATTTACAAAGGGAAAACCAATATCTTAGTGGGGATGAAGAAGACTCTTGTGTTTTACAAAGGAAGAGCTCCAAAAGGCAAATTCTCAGGTCACAACCTTCCTAAGGCTGCAAAGGATGAATGGGTTGTCTCCAAGGTTTTCCATAAGAACACAGATCTTAAAAAGATCCCAATTTCAGGTATTTTGAGGATAAACTCAATAGGAAATAATGATCTATTGGATTTTTCTTCAATCCCTCCTCTTGTGGATCATACTCATCCTTATGGTGACTACACCACCAACAAACCTTCAAGTTACAACAACATTGTGGATGACTTCAAGGAGTCTAACATTATAACACAATCAGCACCATCATCATCACTTAAATCACAATCAAACGGCTATTATTCTCCCTTCATCAACAACAATCAGCAACATCAGATGATGATAAAGCCAGGGAATCACACAAGCTATCATCAGATTCCCAACTATGTCACTGTCACCAACCAACAAGGGAATTTCAGTAATCCAATAATGGGAAGCACATCCTTGAACTTGCTCAATAATAGTGATGTTTATGGATTATTGAACAAAGAGTGCAAGATGGAGCCATTGTCTACTAATCAGTCATTGGTGAGTGTGTCACAGGACACTTGTCTGAGCAATGACATAAACACTGACACATCCTCTGTGGTTTCAAAGCAAGACAACATGATAATGCAAAGGAATAAAGCATTGTATGAGGATTTTGAGGTTCCTTCTTCAGTTGCCCCTCTTTCAGATTTGGGATACCTCTGGGATGACTGTTGA 1104 0.394 MEEAVVVNKGDEALDLPPGFRFHPTDEEIITCYLTEKVLNSNFSAIAIGEADLNKCEPWDLPKIAKMGEKDWYFFYQRDRKYPTGTRTNRATQSGYWKATGKDKEIYKGKTNILVGMKKTLVFYKGRAPKGKFSGHNLPKAAKDEWVVSKVFHKNTDLKKIPISGILRINSIGNNDLLDFSSIPPLVDHTHPYGDYTTNKPSSYNNIVDDFKESNIITQSAPSSSLKSQSNGYYSPFINNNQQHQMMIKPGNHTSYHQIPNYVTVTNQQGNFSNPIMGSTSLNLLNNSDVYGLLNKECKMEPLSTNQSLVSVSQDTCLSNDINTDTSSVVSKQDNMIMQRNKALYEDFEVPSSVAPLSDLGYLWDDC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi501g00017 367 Gene3D NAC domain 25 159 IPR036093 GO:0003677|GO:0006355
Sebi501g00017 367 Pfam No apical meristem (NAM) protein 17 134 IPR003441 GO:0003677|GO:0006355
Sebi501g00017 367 ProSiteProfiles NAC domain profile. 16 169 IPR003441 GO:0003677|GO:0006355
Sebi501g00017 367 SUPERFAMILY NAC domain 12 154 IPR036093 GO:0003677|GO:0006355
Sebi501g00017 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 258 - -
Sebi501g00017 367 FunFam NAC domain-containing protein 100-like 25 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi501g00017 Sebi-Chr501 301719 303220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi501g00017 1 365 NAC Transcription Factor Family AT5G18270 48.196 2.38e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi501g00017 NAM 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi501g00017 - - aprc:113861501 429.098