Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi500g00031 ATGCAGGCCTCAGGCTGCTTCCTCGTGCTCTCTTTCCTCTTCCTATCATCATCTTTCTCCTTTGCACTTTCCTCTGATGAAGCCTCTTTCATTGCTCGTCGCCAATTGTTACACCTTAGTGAGAAAGATGATTTACCTGATCACTATGCAGATAACTACAAAACAGATCTAAAATTCCCTAATTCTAAGCTCAAGAGTGCTTACATTGCACTCCAGGCATGGAAAAAAGCAATCTATTCTGACCCAACAAACTTCACAGAGAATTGGGTAGGCCCAGATGTTTGTTCCTACAATGGAGTTTTCTGTGCCGAATCTCTGGATGACCCAAAGACCGAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATTGCAGGTTACCTTCCTCCAGAGTTTGGTTTGTTAACTGATCTTGCTCTTTTGCATATTAACTCAAACAGGTTCTGTGGGGTTCTCCCAAAGAGCTTCACCAAGTTAAAGCTTTTACATGAGCTTGATATCAGTAACAACCGTTTTGTTGGTCCATTCCCAAAGTCTGTTCTTTCAATCCCAGATATCAAATACCTTGACCTCAGGTTCAATGACTTTGAAGGGGCTATACCTTCTGAGCTTTTCAACAAAACACTTGATGCCATCTTTTTGAACAACAACAGATTCACATCCACAATTCCAGAGAACATGGGGTCTTCTCCAGCTTCTGTTGTGGTTTTAGCTAATAACCATCTCAGTGGCTGCATTCCTGGAAGTGTTGGTGATATGAAAGGGACATTGAATGAGTTTATTTTGATTAACAACAACCTCACTGGTTGTTTGCCCTCAGACATTGGAAAGCTTGAACAAGTCTCTGTCTTTGATGTGAGCCAGAACTCATTTGTTGGTGTATTGCCAAGGACCTTCAAGGGGCTAAAAAATGTGGAGGAGATTTCAATTGCAAACAACAAGCTCACAGGTTTTGTGCCACGTGCCATATGTAGCTTGCCCAAATTGGTAAACTTCACATTCTCTTATAACTATTTCAATGGAGAGGAAGAAGGTTGTGTGCCTTCTAAAAAGGACAAGGACATTGTGTTGGATGATACCAACAATTGTATCCCAGATAGACCAAAGCAAAAGGCAGCAAATGTTTGCAATGTTGTCATAAGCAAGCCTGTTGAATGCAGTAAGGCACAATGTGGTAACCCATCTAGCTCCAATTCTCCATCTGAGAAGCCAACACCAAAACCTTCCCCTTCTCCTTCTAAACCTCCAAGTGAGAAGCAAACACCATCCTCACCCTCTAAGCCTCCTCCATCTGAGAACCCAACACCAAAGTCACCCCCTCAACCTACCCCTTCACCCTCCAACCCTCCAACTCAGAAGCAAACACCACCACCAGCACAACCCAAACCTAGCCCTTCACCCTCCAACCCTCCAACCCAGAAGCAAACACCACCACCAGCACAACCCAAACCTAGCCCTCCTCCATCCAATCCTTCACCTGAAAAACCAAAAACACCAGAACCAGCACAACCACCTCAAGAAGAATCACCACCAGAGGAGGATGATCCTCACAAGGAAGCACCAAGGCGACGAATAAGGTCTCCACCTCCACCAGTTCAATCCCCACCACCACCAGTTTATTCTCCACCTCCACCAGTTCAATCCCCACCACCACCGGTTCAGTCCCCTCCTCCACCAGTTCAATCCCCACCACCGCCGGTTCAATCTCCTCCTCCCCCAGTTCAATCCCCACCACCACCGGTTCAATCCCCTCCACCACCAGTCTACTCTCCACCACCTCCGGTTCACTCCCCTCCTCCACCAGTTCACTCTCCACCACCACCGGTCCAATCTCCTCCACCACCACCACCACCAGTCCAATCTCCACCGCCACCTGTCTATTCTCCACCACCACCAGTTAGCTCCCCTCCACCACCAGTCTACTCTCCTCCACCACCAGTTCAGTCCCCACCACCACCACCACCACCAGTTAACTCTCCTCCACCACCAGTCCACTCACCACCACCACCAGTGTACTCACCACCACCACCAGTGCAGTCTCCACCACCTCCTTCACATGATGACGATATCGTTCTTCCCCCTCATTTTGGCTCTTCATATGCTTCCCCACCTCCACCAGTCATTACCGGCTACTAA 2136 0.478 MQASGCFLVLSFLFLSSSFSFALSSDEASFIARRQLLHLSEKDDLPDHYADNYKTDLKFPNSKLKSAYIALQAWKKAIYSDPTNFTENWVGPDVCSYNGVFCAESLDDPKTEVVAGIDLNHADIAGYLPPEFGLLTDLALLHINSNRFCGVLPKSFTKLKLLHELDISNNRFVGPFPKSVLSIPDIKYLDLRFNDFEGAIPSELFNKTLDAIFLNNNRFTSTIPENMGSSPASVVVLANNHLSGCIPGSVGDMKGTLNEFILINNNLTGCLPSDIGKLEQVSVFDVSQNSFVGVLPRTFKGLKNVEEISIANNKLTGFVPRAICSLPKLVNFTFSYNYFNGEEEGCVPSKKDKDIVLDDTNNCIPDRPKQKAANVCNVVISKPVECSKAQCGNPSSSNSPSEKPTPKPSPSPSKPPSEKQTPSSPSKPPPSENPTPKSPPQPTPSPSNPPTQKQTPPPAQPKPSPSPSNPPTQKQTPPPAQPKPSPPPSNPSPEKPKTPEPAQPPQEESPPEEDDPHKEAPRRRIRSPPPPVQSPPPPVYSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVYSPPPPVHSPPPPVHSPPPPVQSPPPPPPPVQSPPPPVYSPPPPVSSPPPPVYSPPPPVQSPPPPPPPVNSPPPPVHSPPPPVYSPPPPVQSPPPPSHDDDIVLPPHFGSSYASPPPPVITGY 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi500g00031 711 Gene3D Ribonuclease Inhibitor 66 234 IPR032675 -
Sebi500g00031 711 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Sebi500g00031 711 Pfam Leucine rich repeat 281 337 IPR001611 GO:0005515
Sebi500g00031 711 MobiDBLite consensus disorder prediction 526 689 - -
Sebi500g00031 711 MobiDBLite consensus disorder prediction 510 525 - -
Sebi500g00031 711 Gene3D Ribonuclease Inhibitor 235 366 IPR032675 -
Sebi500g00031 711 Pfam Leucine rich repeat N-terminal domain 68 102 IPR013210 -
Sebi500g00031 711 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Sebi500g00031 711 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 511 - -
Sebi500g00031 711 MobiDBLite consensus disorder prediction 401 506 - -
Sebi500g00031 711 PRINTS Proline rich extensin signature 437 449 - -
Sebi500g00031 711 PRINTS Proline rich extensin signature 449 470 - -
Sebi500g00031 711 PRINTS Proline rich extensin signature 398 410 - -
Sebi500g00031 711 PRINTS Proline rich extensin signature 415 431 - -
Sebi500g00031 711 SUPERFAMILY L domain-like 68 346 - -
Sebi500g00031 711 MobiDBLite consensus disorder prediction 388 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi500g00031 Sebi-Chr500 705260 707395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi500g00031 22 444 Trihelix Transcription Factor Family AT2G15880 59.529 3.56e-176 519