Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi500g00016 ATGGCACCCAGTTTTGATTGTGTTTCAAGCCTCCTTTGTGCTGAGGATAGCAGTGTTTTTGATGATGGGGATGTGTACGAGGAAACGGGGCGTTCTAGGTACCATCAGAGGAGTGAGGAGCAGTTTGGTGACCCAGATGGGTTGCCATTGCAGAGTGAAGAGTGTTTGGCGATGATGATGGAAAAGGAATGTCAACACTTGCCTTGTGCTGATTACTTCAATAGGCTACAGAGTGGGGATTTGGACTTTGGGGCCAGAAAGGAAGCCATTGATTGGATTGAAAAGGTTCGAGCGCATTTCGGTTTTGGTCCTCTCTCTGCATATCTATCCATAAATTACTTGGATCGGTTCCTTTCTGCATATGAATTACCAAAGGGAAGAGCTTGGACAATGCAACTATTGGCTGTGGCATGCTTATCTCTTGCAGCCAAAATAGAGGAAACTGAAGTTCCTCTGTGTCTTGATTTGCAGGTGGGTGAATCCAAGTTTGTATTTGAGGCTAAAACCATACAGAGAATGGAGCTTCTGGTACTGAGCACATTGAGGTGGAGAATGCAAGCAATTACTCCATTCTCCTTCATTGATTATTTCCTTTCCAAGATCAATGATGATCAAAGTTCATTTAGATCTTCAATTTTGAGATCCACCCAGCTTATATTAAGCACCTTAAAAGGGATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTACATATGTTGTGGGGGAAACCGAAACAATTGACACTGCCAAAACAATTTCAGTTCTGATTCAACATGTAGAAAAGGAGAGATTATTGAAGTGTGTCAAAATGATCCAAGAGCTGTCATCAAACAGTGTTTCTGTCCCTTGTGTGCCACAAAGCCCAATAGGTGTGTTGGATGCTTTGTGCTTCAGCTACAAAAGTGATGACTCAAATGCTGGTTCATTTTCTTCACATAATAGTCCAGAAGCTAAAAGGAGGAAGCTAAACAAAACCTGTGGAGCAGAGCTTTTGTAG 1011 0.4253 MAPSFDCVSSLLCAEDSSVFDDGDVYEETGRSRYHQRSEEQFGDPDGLPLQSEECLAMMMEKECQHLPCADYFNRLQSGDLDFGARKEAIDWIEKVRAHFGFGPLSAYLSINYLDRFLSAYELPKGRAWTMQLLAVACLSLAAKIEETEVPLCLDLQVGESKFVFEAKTIQRMELLVLSTLRWRMQAITPFSFIDYFLSKINDDQSSFRSSILRSTQLILSTLKGIDFLEFKPSEIAAAVATYVVGETETIDTAKTISVLIQHVEKERLLKCVKMIQELSSNSVSVPCVPQSPIGVLDALCFSYKSDDSNAGSFSSHNSPEAKRRKLNKTCGAELL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi500g00016 336 SMART cyclin_7 91 179 IPR013763 -
Sebi500g00016 336 Pfam Cyclin, N-terminal domain 55 185 IPR006671 -
Sebi500g00016 336 Pfam Cyclin, C-terminal domain 188 285 IPR004367 -
Sebi500g00016 336 CDD CYCLIN_AtCycD-like_rpt2 188 276 - -
Sebi500g00016 336 SUPERFAMILY Cyclin-like 170 279 IPR036915 -
Sebi500g00016 336 SUPERFAMILY Cyclin-like 44 185 IPR036915 -
Sebi500g00016 336 FunFam D6-type cyclin 183 274 - -
Sebi500g00016 336 Gene3D - 56 275 - -
Sebi500g00016 336 CDD CYCLIN_AtCycD-like_rpt1 85 183 - -
Sebi500g00016 336 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Sebi500g00016 336 Gene3D - 69 186 - -
Sebi500g00016 336 PANTHER CYCLINS 52 281 IPR039361 -
Sebi500g00016 336 SMART Cyclin_C_2 188 303 IPR004367 -
Sebi500g00016 336 FunFam D2/4-type cyclin 69 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi500g00016 Sebi-Chr500 241916 243751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi500g00016 39 313 Core Cell Cycle Gene Families AT2G22490 48.148 4.52e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi500g00016 K18810 - gmx:547739 494.582