Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi4g00061 ATGGAAGATCGAAGTAGCGCATGTGACCCTAATTTATCCTTCTCCTCCAAAATGGAGGATCAAGAAGATAGCAAAAATTGTCACGGGTCTGCCAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAAATGATGAGACCGAGTACCACTCCAACCACTACTCATGACAAAGCAATCAACACTACTACTTCTGCTACTCCTCTAAGTCCAAGATTTCAAAATCAAGGGCAGGAAAACAGGTACAGCCAAAGAAGCCCTCGTAACAACAACAACAATAGCACCACTACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATTAGGCAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTGGCCACTCCTTTAAACAATGCATCATCTACAAAGACGAGAGTGCATCATCATAACAAGGAAAAGAAGCCTCGTATAAACCATTTTGGACAGTTCAAGAATAAGCACAAGGCCACTACTACAACTAGTGCTGCAGGCTCATCTCAGGGTGTGAGGAAGCTTGAATGTTTCAAGGACTTGGCAATAAGTTTGAGGAATAACTCGGGCTTTCAGCAAGTGTTTCCGAGGGATGAAGTAGCTGAGGCGGCGCTGCTTCTGATGGATTTATCTTGTGGTTTTGTTCACTCTTAA 714 0.4384 MEDRSSACDPNLSFSSKMEDQEDSKNCHGSAKWMSSKMRLMKKMMRPSTTPTTTHDKAINTTTSATPLSPRFQNQGQENRYSQRSPRNNNNNSTTTRVCSDCNTSSTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATPLNNASSTKTRVHHHNKEKKPRINHFGQFKNKHKATTTTSAAGSSQGVRKLECFKDLAISLRNNSGFQQVFPRDEVAEAALLLMDLSCGFVHS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi4g00061 237 ProSiteProfiles GATA-type zinc finger domain profile. 93 129 IPR000679 GO:0006355|GO:0043565
Sebi4g00061 237 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 15 237 - -
Sebi4g00061 237 MobiDBLite consensus disorder prediction 144 164 - -
Sebi4g00061 237 MobiDBLite consensus disorder prediction 46 100 - -
Sebi4g00061 237 CDD ZnF_GATA 98 135 IPR000679 GO:0006355|GO:0043565
Sebi4g00061 237 MobiDBLite consensus disorder prediction 1 32 - -
Sebi4g00061 237 Pfam GATA zinc finger 99 132 IPR000679 GO:0006355|GO:0043565
Sebi4g00061 237 MobiDBLite consensus disorder prediction 45 100 - -
Sebi4g00061 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 133 - -
Sebi4g00061 237 ProSitePatterns GATA-type zinc finger domain. 99 124 IPR000679 GO:0006355|GO:0043565
Sebi4g00061 237 Gene3D - 93 182 IPR013088 GO:0006355|GO:0008270
Sebi4g00061 237 SMART GATA_3 93 153 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi4g00061 Sebi-Chr4 2293092 2294461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi4g00061 30 236 C2C2-Gata Transcription Factor Family AT4G26150 37.333 2.73e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi4g00061 GATA 4.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi4g00061 - - gmx:100780326 263.462