Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi4g00043 ATGGCTGGCCGAAATTCTACTGTCATAGAAGATATTACTCAGCATCTCACACCAAAGCCACTCATTTATTGCTATTCATTTGACCTCAATAACCAAAACCACATGATAAATGGAATTCCAATACTTGCTGGAGAGCAAGGTGAACCTGTAAGAAGTGACCAGGTAGATGGTCACTTCACAAATCTTGCTAATTCTAATTCATTTGTTGCATCATCACAAGGAAAGACTATTGTGGGAGATGCCTCAAATCCTATTGACAACACTAACTTTCAAGAGCATTTAGCTGGAGGAAGGTCAATTCCTTCAGCTTCACTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAAATTCAGCAGCTTTGTCTCCTTCAGTCTATTCATTGGAGGCATTGGGGCCATATATCTTCAATAATTGGCAAGATGCCTCAAACCCTTTGTCTGCAACTTTTGGTGAGAGTGGCTATGAGGAAGTACCCAGTAATGGTAGGTGGAATGTCAACAAATATCTGAAAGCCCCAGAGGTTGATGGGACTGGGTTGCTGTCTTATTCATCCATAGGAAACCTGGATCCACATGGATGGACATCATCAAATGTTGCAAACTTGGCTAATCTTGCTTACAGTTCCTCTAAGTGTAGTAATGAGCCATCACTAAGTCTTGCAACATCTCCAACCACTGGTCAGTGCTCAGAGATGAGCTGCTCTGACTTAACCCATAGCACAAATGGAACAAGATCAGGGTTGGAGCAAGCCTCCTGCAGCAGTATGGAACTTTCTATGAGTTTAGGTTCTAATAAAAATGTTAAGTTTTCACCAGCAATCCTGGGATCAAGATACCTTGCTGGAATTCAGGAGATACTTGTTCAAATTGCAACATATTCATTTCAAAATCTTAAAGAGATAAATCATTCATCTGGTAGTGTTAGAGAAGGAGGAAATAAATCAACTTCAGCTTTCACATCCAAGAGAAGAACAGCAATGCATCACAGTTCAAATTCTATGTTTGAAGCACATGCAGAATCTCCATTGCATAAACATGCTTCTGAATCAAGCAAATCCCAACTGCTGATGCTTCTACAGCTGGTAGACAATCAATATAGTCAGTGTCTGGATGAGATTCATACTGTTGTATCTGCATTCCATGCTGCTACTGAGCTAGACCCACACATACATACACATTTTGCTCTTCAAACAATCTCTATCCTATACAAGGACTTGAGAGAGAGAATTAGCAATCATATTCTTGCCATGGGATCCAATTTTAACAGCTCATGCTCAGAAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCAGTTATGGAGGCCCCAGAGGGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGTGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCCAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGCTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCAAGAGTTAGGCTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGAAGGAAAGGAGAACTGTCATAGAAGCAGGATAAGCATGAACAATCAAATGTTTAATATCAATTGA 1665 0.4 MAGRNSTVIEDITQHLTPKPLIYCYSFDLNNQNHMINGIPILAGEQGEPVRSDQVDGHFTNLANSNSFVASSQGKTIVGDASNPIDNTNFQEHLAGGRSIPSASLPARIGLQENLENSAALSPSVYSLEALGPYIFNNWQDASNPLSATFGESGYEEVPSNGRWNVNKYLKAPEVDGTGLLSYSSIGNLDPHGWTSSNVANLANLAYSSSKCSNEPSLSLATSPTTGQCSEMSCSDLTHSTNGTRSGLEQASCSSMELSMSLGSNKNVKFSPAILGSRYLAGIQEILVQIATYSFQNLKEINHSSGSVREGGNKSTSAFTSKRRTAMHHSSNSMFEAHAESPLHKHASESSKSQLLMLLQLVDNQYSQCLDEIHTVVSAFHAATELDPHIHTHFALQTISILYKDLRERISNHILAMGSNFNSSCSEEENEWSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRNEEGKENCHRSRISMNNQMFNIN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi4g00043 554 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 223 529 - -
Sebi4g00043 554 MobiDBLite consensus disorder prediction 304 332 - -
Sebi4g00043 554 CDD homeodomain 455 516 IPR001356 GO:0003677
Sebi4g00043 554 ProSiteProfiles 'Homeobox' domain profile. 452 515 IPR001356 GO:0003677
Sebi4g00043 554 Pfam Homeobox KN domain 472 511 IPR008422 GO:0003677|GO:0006355
Sebi4g00043 554 Gene3D - 458 537 - -
Sebi4g00043 554 SMART prehox3 268 412 IPR006563 -
Sebi4g00043 554 SMART HOX_1 455 519 IPR001356 GO:0003677
Sebi4g00043 554 SUPERFAMILY Homeodomain-like 457 524 IPR009057 -
Sebi4g00043 554 Pfam Associated with HOX 274 411 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi4g00043 Sebi-Chr4 1635766 1637942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi4g00043 209 528 Homeobox Transcription Factor Family AT4G32980 56.135 7.74e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi4g00043 POX 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi4g00043 - - gmx:100812648 806.208