Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi4g00016 ATGGGAAGAGCACCTTGTTGTGACAAAGCAAATGTTAAGAGAGGACCATGGTCTCCAGAAGAAGATGCAACACTCAAGAGTTATTTAGAGACTCATGGCACTGGGGGAAATTGGATTGCATTGCCAAGAAAAGCTGGCCTTAGGCGGTGTGGGAAGAGTTGCCGTCTGAGATGGCTCAATTATCTTAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACATCATTTGCACCCTCTATACTCAGATGGGAAGTAGATGGTCTGCTATAGCATCTCAACTTCCTGGCAGAACAGACAATGATGTGAAAAACTATTGGAACACAAAACTAAAGAAGAAGATGATGGCAGGGAAAGTTAGCCTCAAATCCCAGCTGAAAGAAAATGACACTCTTCCTTCAGTTTCAGCTCCATCATCACTAATTCAAAATGCTATGACTCAAATTTCAGATTTCCCTGCTTCACAAAATCAAAATCCTCCTCCACCCTCAAGTTTGCCAATCTTAGATACTAATGATGCTAGTTCTGGATTCAACATTATTGAAAATAACATGAGTTTTGACCAAATTCATCATCAGTTGTACAATTCACAGTTCATAGATGCTGTCCCAGAAATTGGTGCAAGTTTAAGGAACAACAATCCCTTAGTGTCATTGTCTCAAGAAGATTCAGGGAACAACAACCCAATAGTGTCATTGTCTCAAGAAGGTTCAAGGATCAACAATCCTATAATGTCATTGTCTCAAGAAGGTTCAAGCATTTCAGATTCCTCTTCCATTGCAGTGAACAACCAGTGTGTATCTTTACCAGGGCATGCTGGTAGTGAATCTACAGATATGTTGATGGATTTTGGCTTGGATATCCTTATGATCTTGCTAATGGTCTTAACTGCCATGAGAGAGTTGGTGAATTTGCTTCAAGTTTCAGCTATCCTGAGTGGGTTGATTTTAGCTATGCTGAAATTAAGCCAGATTGACTGA 987 0.4053 MGRAPCCDKANVKRGPWSPEEDATLKSYLETHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYTQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKMMAGKVSLKSQLKENDTLPSVSAPSSLIQNAMTQISDFPASQNQNPPPPSSLPILDTNDASSGFNIIENNMSFDQIHHQLYNSQFIDAVPEIGASLRNNNPLVSLSQEDSGNNNPIVSLSQEGSRINNPIMSLSQEGSSISDSSSIAVNNQCVSLPGHAGSESTDMLMDFGLDILMILLMVLTAMRELVNLLQVSAILSGLILAMLKLSQID 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi4g00016 328 PANTHER OS09G0431300 PROTEIN 1 260 - -
Sebi4g00016 328 FunFam Transcription factor RAX3 70 137 - -
Sebi4g00016 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Sebi4g00016 328 CDD SANT 71 113 IPR001005 -
Sebi4g00016 328 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sebi4g00016 328 Gene3D - 7 68 - -
Sebi4g00016 328 Gene3D - 70 136 - -
Sebi4g00016 328 FunFam Transcription factor RAX3 7 68 - -
Sebi4g00016 328 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sebi4g00016 328 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Sebi4g00016 328 CDD SANT 16 62 IPR001005 -
Sebi4g00016 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sebi4g00016 328 SMART sant 67 115 IPR001005 -
Sebi4g00016 328 SMART sant 13 64 IPR001005 -
Sebi4g00016 328 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Sebi4g00016 328 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi4g00016 Sebi-Chr4 760220 762146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi4g00016 1 118 MYB Transcription Factor Family AT3G49690 82.203 1.58e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi4g00016 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi4g00016 K09422 - gmx:100789985 360.918