LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi4g00010	ATGGAGGAATACACTAATAATCATCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCCTCTGGAAACCAAAACCAAAACCATCAGCATCTTCAGTTTCCAATCAACACCTTTAATCTTCAATCAGGTGGATCAGATCACTGCTTTCAATCGGATCAAGCATCACCACATCACCCTGCTGTGAAAACCGAAGCAAGCACCTCGCAGCTTCATACTCCGATTTTCCATTACCCTTTAATGAGAGGAAATCTTGTTATGCATCCTCCTCAACAAGGAGGAGGAGGGAGTCCAAGCTCTAGTGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTAGAAGCCTACATGGATTGCCAAAAGATAGGAGCTCCACCGGAAGTGGTGGCGCGTTTGGTTGCTGCAAGGCAAGAGTTTGAAGCAAGGCAACGATCTTCAGTTAGCTCCAGAGAAACTTCCAAGGATCCAGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAAGCGATGGATTTCATGAGGAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTTCGGATCTTCTCTGATGATAAATGTGAAGGTGCTGGTTCATCAGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAACTGCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTCAAAAACCACTTGCTGAGGAAATACAGTGGTTACCTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATACCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCACAGAACGCATCTCTTTATATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGACCATAA	1095	0.432	MEEYTNNHPSPSPRPNFLYSSGNQNQNHQHLQFPINTFNLQSGGSDHCFQSDQASPHHPAVKTEASTSQLHTPIFHYPLMRGNLVMHPPQQGGGGSPSSSEAEAIKAKIIAHPQYSSLLEAYMDCQKIGAPPEVVARLVAARQEFEARQRSSVSSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNASLYMDGHYMADGHYRLGP	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi4g00010	364	ProSitePatterns	'Homeobox' domain signature.	304	327	IPR017970	GO:0000981\|GO:0006355
	Sebi4g00010	364	SMART	ELK_2	246	267	IPR005539	GO:0003677
	Sebi4g00010	364	Pfam	KNOX2 domain	158	204	IPR005541	GO:0003677\|GO:0005634
	Sebi4g00010	364	FunFam	Homeobox protein knotted-1-like 2	271	333	-	-
	Sebi4g00010	364	Gene3D	-	271	333	-	-
	Sebi4g00010	364	SMART	KNOX2_2	154	205	IPR005541	GO:0003677\|GO:0005634
	Sebi4g00010	364	MobiDBLite	consensus disorder prediction	214	243	-	-
	Sebi4g00010	364	SUPERFAMILY	Homeodomain-like	267	341	IPR009057	-
	Sebi4g00010	364	Pfam	ELK domain	246	267	IPR005539	GO:0003677
	Sebi4g00010	364	ProSiteProfiles	ELK domain profile.	246	266	IPR005539	GO:0003677
	Sebi4g00010	364	ProSiteProfiles	'Homeobox' domain profile.	266	329	IPR001356	GO:0003677
	Sebi4g00010	364	MobiDBLite	consensus disorder prediction	1	26	-	-
	Sebi4g00010	364	Pfam	Homeobox KN domain	286	325	IPR008422	GO:0003677\|GO:0006355
	Sebi4g00010	364	Pfam	KNOX1 domain	104	146	IPR005540	GO:0003677\|GO:0005634
	Sebi4g00010	364	SMART	HOX_1	268	333	IPR001356	GO:0003677
	Sebi4g00010	364	SMART	KNOX1_2	103	147	IPR005540	GO:0003677\|GO:0005634
	Sebi4g00010	364	MobiDBLite	consensus disorder prediction	48	67	-	-
	Sebi4g00010	364	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	51	336	-	-
	Sebi4g00010	364	CDD	homeodomain	278	330	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi4g00010	Sebi-Chr4	434860	439539	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi4g00010	45	364	Homeobox Transcription Factor Family	AT4G08150	72.121	8.08e-157	444

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Sebi4g00010		KNOX2	2.6e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi4g00010	-		-	gmx:100807602	627.091