Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi49g00124 ATGCACTTGAAACATTACTGTTGTTTCCTCTTAAATGAAGGGCAAAACAAAACACAGACTGCCAACAAGGAGAGTAGGGACTATCCTTGGGAAATGTACACTTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGAGGATTTGGAAGTATTGCAGTAAAGCGCTTGAAGACTATGACAGCAAAGGCAGAGATGGAATTTGCAATTGAAGTTGAAGTACTTGGAAGAGTGAGGCATAAAAATTTGTTGGGATTGAGAGGATTCTATGCAGGGGAAAATGAAAGGTTAATTGTCTATGATTACATGCCTAACCATAGCTTGCTTACTCATTTACATGGTCCACTCTCTAAGGAATGTCACTTAGATTGGTCTAGAAGAATGAGTATAGCAATTGGAGCAGCTGAAGCTCTAGCGTATTTGCACCATGAGGCAACTCCTCACATCATACACAGAGATATAAAGGCAAGCAATGTTCTTTTAGACCCTGAATTTGAAGCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTTGTACCTGAAGGTGTAACCCATCTTACCACAAAGGTTAAAGGCACAAGAGGATATTTGGCACCAGAATATGCCATGTGGGGGAAAGTTTCTGAGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTATTAGTGCCAAGAGACCAATTGAGAAATTCCCTGGGGGAGGGAAAAGGGATATTGTTCAATGGGTCACACCATATGTTAACAAGGGTCTCTTCAATAATATTGCTGATCCAAAGTTGCAGGGGAAATTTGATTTGGAACAATTGAAAGGTGTGCTCATGATAGCTATGAGATGCACAGATAGTAGCGGAGAGAAGAGGCCTAGCATGACAGAGGTGGTGGATTGGCTCAAGAATGGTGTAGGGAAGGGAAGAGATTCCAATTTTCAGTAA 957 0.4086 MHLKHYCCFLLNEGQNKTQTANKESRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSIAVKRLKTMTAKAEMEFAIEVEVLGRVRHKNLLGLRGFYAGENERLIVYDYMPNHSLLTHLHGPLSKECHLDWSRRMSIAIGAAEALAYLHHEATPHIIHRDIKASNVLLDPEFEAKVADFGFAKLVPEGVTHLTTKVKGTRGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKRPIEKFPGGGKRDIVQWVTPYVNKGLFNNIADPKLQGKFDLEQLKGVLMIAMRCTDSSGEKRPSMTEVVDWLKNGVGKGRDSNFQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi49g00124 318 Gene3D Transferase(Phosphotransferase) domain 1 110 312 - -
Sebi49g00124 318 FunFam PTI1-like tyrosine-protein kinase At3g15890 110 316 - -
Sebi49g00124 318 SUPERFAMILY Protein kinase-like (PK-like) 27 307 IPR011009 -
Sebi49g00124 318 PIRSF ILK 10 309 - -
Sebi49g00124 318 Gene3D Phosphorylase Kinase; domain 1 8 109 - -
Sebi49g00124 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Sebi49g00124 318 Pfam Protein kinase domain 58 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi49g00124 318 PANTHER OS01G0253100 PROTEIN 23 308 - -
Sebi49g00124 318 FunFam PTI1-like tyrosine-protein kinase At3g15890 17 109 - -
Sebi49g00124 318 ProSiteProfiles Protein kinase domain profile. 45 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi49g00124 318 SMART serkin_6 45 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi49g00124 Sebi-Chr49 2657454 2659078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi49g00124 33 307 Trihelix Transcription Factor Family AT1G70460 42.662 1.14e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Sebi49g00124 Pkinase 1.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi49g00124 - - gmx:100800710 562.762