Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi49g00122 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACAGAAAGACAAAGAAGGCAAGAGATGGCCCAACTCTGCACCACACTTAGATCCCTTCTGCCTTTAGAATATATTAAGGGAAAGCGCTCAACTTCTGATCATGTGTTTGAGGCTATCAATTATATCAACCATCTACAGAATAAGGTGAAGCAATTGGAAGCTAAGAAGGATGAATTAATAAAGTTGGTGCCTAATTTGAGTACTAATATTGACCCTGATGAAAGTGAAAGCTCTACTAGCAATCTTCCACCTTTTGTTAATATTCAACCTTTTCATGGAGGCCTTGAGATTATGTGCAGTTGCAACATGTTTCCTTTGTCAAGAATTCTAGAGATATTGCTTGAAGAAGGGATTAATGTTGTTAGCAGTACTTCCACCAAAATGGATGGTAGATTCATACACACTATACGATCAGAGGATCCAATTCATCCAAATATGAGTGGCACTGATTACTCTGAGCTGCAAAGAAAGCTTATGGAAGCAATATCATCTTCAAGTTTGCAAGAGACTTTGCCTGCTGAACCTGAAAATTGCTAA 570 0.3807 MDENKKWMHKETERQRRQEMAQLCTTLRSLLPLEYIKGKRSTSDHVFEAINYINHLQNKVKQLEAKKDELIKLVPNLSTNIDPDESESSTSNLPPFVNIQPFHGGLEIMCSCNMFPLSRILEILLEEGINVVSSTSTKMDGRFIHTIRSEDPIHPNMSGTDYSELQRKLMEAISSSSLQETLPAEPENC 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi49g00122 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 75 IPR036638 GO:0046983
Sebi49g00122 189 CDD bHLH_AtORG2_like 5 74 - -
Sebi49g00122 189 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Sebi49g00122 189 Coils Coil 46 80 - -
Sebi49g00122 189 FunFam Transcription factor bHLH126 1 84 - -
Sebi49g00122 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 172 - -
Sebi49g00122 189 SMART finulus 10 62 IPR011598 GO:0046983
Sebi49g00122 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Sebi49g00122 189 Gene3D - 1 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi49g00122 Sebi-Chr49 2588489 2589462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi49g00122 9 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.197 3.40e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi49g00122 HLH 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi49g00122 - - ccaj:109791323 282.337