Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi49g00112 ATGGTTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCTTTTATTCATCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAATGAGGCAGTGAATTACATAAAACACATGGAGAATAAAATCAAAGAACTTGGTGCCAAGAGAGAAGAACTGAAGAAACTCTTTGATTCCAAGACCAAGATGGAAAACCATGAGATCAATAATCATACATCTGGGAACTTCACTATCCACCACAATAATGGTATTCTGGGAATAGAAATTACAAGTGGTGGTGGTTTGAAAGAGGAAAGACTCAAACTTTCAAAGTTACTACAATTGCTGCTTGAAGAAGGACTTGAAGTTAGTTGCCTTTCAAACCAAGTCAATGGCAGATTGCTTCACAGTGTCCAGTTTGAGGTTAACAATTCCAACAGTGTAGATCTATCTGAGCTGAGAAGGAAAATTGCCAATGTAATTCCGACATTAAGATGTTCTGATTCTGATTAG 525 0.3867 MVHREIERQRRQEMATFYSSLRSLLPLEFIKGKRSISDHMNEAVNYIKHMENKIKELGAKREELKKLFDSKTKMENHEINNHTSGNFTIHHNNGILGIEITSGGGLKEERLKLSKLLQLLLEEGLEVSCLSNQVNGRLLHSVQFEVNNSNSVDLSELRRKIANVIPTLRCSDSD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi49g00112 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 50 IPR011598 GO:0046983
Sebi49g00112 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 66 IPR036638 GO:0046983
Sebi49g00112 174 Coils Coil 40 67 - -
Sebi49g00112 174 Gene3D - 1 83 IPR036638 GO:0046983
Sebi49g00112 174 SMART finulus 4 56 IPR011598 GO:0046983
Sebi49g00112 174 FunFam Transcription factor bHLH126 1 78 - -
Sebi49g00112 174 Pfam Helix-loop-helix DNA-binding domain 3 51 IPR011598 GO:0046983
Sebi49g00112 174 CDD bHLH_AtORG2_like 1 67 - -
Sebi49g00112 174 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 3 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi49g00112 Sebi-Chr49 2427202 2428172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi49g00112 3 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.373 9.72e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi49g00112 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi49g00112 - - gmx:100780888 230.335