Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi49g00090 ATGACCTTCGATACGATCCTTGATGGCTCCGATTTGGTTGGACGCGCTCGCACCGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCAATATTAGAGTCTTTGACAAATGGTCCAGGTAAAGCGGCGAGAAAGACTGGCTATGGCAGGTCTCCGAGTGTCCTTGTGCTTTTACCTACTAGGGAATTGGCCAGTCAGGTGTTTGCTGATTTTGAAGTTTATGGTTTGGCAATGGGATTGACTTCTTGCTGTTTATATGGTGGAGCTCCATATCATGCTCAAGAGATTAAGCTTAAGAGAGGTGTTGATATTGTTGTTGGAACACCGGGTCGCATAAAGGATCATATAGAGAGGCAAAATATTGACTTGAGCCAGCTAAGGTTCCGTGTCCTTGACGAGGCAGATGAGATGCTGAGGATGGGGTTTGTTGAAGATGTTGAACTCATCCTAGGTAAGGTAGAAGATGTTAATAAAGTTCAGACACTTCTTTTTAGTGCTACTTTGCCAGACTGGGTTAAGCATATTCAAGCAAAATTTCTGAAACGAGATAAGAAAACTGCTGATCTTGTTGGCAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGCAACAGTTCTGCCAGGTCGCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGTCGGACAATTATATTTACTGAGAAGAAGGAGTCTGCTTCTGAACTTGCGGGATTGCTGCCTGGTGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGAGAGGTTACATTGTCAGGTTTTAGGTCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCAGCTAGGGGTCTGGATATTAATGATGTTCAGTTGATTATTCAGTGTGAGCCTCCACGGGATGTGGAAGCATATATCCATCGCTCTGGGCGCACAGGAAGAGCCGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCAAGAAGGTCAAATGTATCTAAAATAGAAAAAGAATCAGGCGTGAAATTTGAACACGTATCTGCTCCTCAGTCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTATCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGAGCTCTTGAACAACTCTGGTTTATCAGCTGTTGAATTAGTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACTGAGATAAAGAAAAGATCACTTCTGACTTCCATGGAGAATTATGTTACATTACTTCTTGAGATTGGAAGACCTATCTTCACCCCATCCTTTGCATTTGGAATCCTAAGGAGATTTATGCCTGAGGAGAAGGTCGAGGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCCAAAGATTTAGATTCATATCTTACTGGTCAGCAGAATGCTGCTAATGTAAGCCTAGAGGTGTTAAAAGCTTTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGAAGATTTGGTGGTGGCCGTGGGTTTAATGATAGACATGGTGGGAATAGGTTTTCAGGTGGAAGAGGTGGCAGGAATAATAGGTTTTCAAATGGTTTTAATGGTGGGAGAGGTAATGGTGGCAGAGGGGGGAAGAGATGGTAA 1668 0.4388 MTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPGKAARKTGYGRSPSVLVLLPTRELASQVFADFEVYGLAMGLTSCCLYGGAPYHAQEIKLKRGVDIVVGTPGRIKDHIERQNIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVEDVNKVQTLLFSATLPDWVKHIQAKFLKRDKKTADLVGNEKMKASTNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIEKESGVKFEHVSAPQSDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAVELVAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAFGILRRFMPEEKVEAVQGLTLTADGNGAVFDVPAKDLDSYLTGQQNAANVSLEVLKALPRLQERDQSRGGRFGGGRGFNDRHGGNRFSGGRGGRNNRFSNGFNGGRGNGGRGGKRW 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi49g00090 555 Gene3D - 185 346 IPR027417 -
Sebi49g00090 555 MobiDBLite consensus disorder prediction 504 555 - -
Sebi49g00090 555 CDD GUCT_RH7_like 413 498 - -
Sebi49g00090 555 Pfam GUCT (NUC152) domain 406 501 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sebi49g00090 555 CDD SF2_C_DEAD 200 326 - -
Sebi49g00090 555 SMART helicmild6 240 317 IPR001650 -
Sebi49g00090 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 329 IPR027417 -
Sebi49g00090 555 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 129 137 IPR000629 -
Sebi49g00090 555 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 3 185 IPR014001 -
Sebi49g00090 555 Pfam Helicase conserved C-terminal domain 219 317 IPR001650 -
Sebi49g00090 555 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 214 356 IPR001650 -
Sebi49g00090 555 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 405 - -
Sebi49g00090 555 Gene3D - 1 184 IPR027417 -
Sebi49g00090 555 CDD DEADc 2 181 - -
Sebi49g00090 555 Pfam DEAD/DEAH box helicase 3 173 IPR011545 GO:0003676|GO:0005524
Sebi49g00090 555 SMART ultradead3 1 203 IPR014001 -
Sebi49g00090 555 SUPERFAMILY RNA-binding domain, RBD 410 493 IPR035979 GO:0003676
Sebi49g00090 555 Gene3D - 420 495 - -
Sebi49g00090 555 FunFam DEAD-box ATP-dependent RNA helicase 7 423 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi49g00090 Sebi-Chr49 1672199 1676413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi49g00090 6 323 Eukaryotic Initiation Factors Gene Family AT3G19760 30.058 3.37e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi49g00090 K16911 - qsa:O6P43_008295 874.774