Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi49g00043 ATGGGGCGTTCAGTACTTGTTTTTCTTATCTTCTCTCTACTGGGTTTTGTCTTGAACCCAACATGTGTTTGTGGGAATGATGAGCTTAGAGCACTCTTGGACTTGAAAGCCACTTTGGATCCAGATGGTCAGTTTCTGTCCTCTTGGACCATGAATGGCAACCCATGTAGTGGTTCTTTTGAAGGGGTGGCTTGCAATGAGAAGGGTCAGGTAGCAAATGTTTCTTTGCAGGGAAAAGGTCTCTCTGGCAAGCTATCACCAGCCATTGCTGGGTTGAAACACTTGACAGGACTTTACTTGCATTACAACTCTTTGTATGGAGAGATACCTAGAGAAATTGCTAACTTGACTGAGCTTAGTGATTTGTACTTGAATGTGAATCACTTGTCTGGTGAAATTCCTCATGAGATCGGCAAGATGGAGAATCTACAAGGAAGCATACCAACACAGCTTGGTGATTTGAAAAAGCTCAGTGTCCTTGCTCTGCAATCAAACCAGTTAGCTGGAGCTATCCCTGCTAGTCTAGGTGATTTGGGAATGTTGATGAGGTTAGATCTGAGTTCTAATCATCTCTTTGGTTCCATTCCCACTAGACTAGCTGATGTTCCTTCATTGCAAGTTCTGGATGTTCACAACAATACTCTCTCTGGGAATGTACCCCCTGCTCTGAAGAGATTAGATGAAGGATTTGTGTATGAATACAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAATGCTTCAGATCATGTGAATCCCAACAGGCCTGAACCTTATGGAGCAGGAGTTACTGGTCTTTCAAGGGATATCCCAGAAACTGCAAATATAAAGTTGCCTTGCAATACAACTCAGTGCCAAAATTCATCAAAATCCAAAAGAGCAACATCTATTACTGTTGGTACAATTGTGGTTACAATTGCATTATCAGCAATTGCTATTCTGACCTTCACCATGTATCGTCGGCGAAAGCAAAAGCTTGGAAGTGCATTTGACATCACTGAAAGCCGTCTAAGTACTGATCAAACCAAGGGTATATACAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACGCCAATGGATGGGATCCATTGGCTGATAGCAGGAATTTTAATGGGGATAGGCAAGATATGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATTTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTTTTAAGAGATGGATCTGTTGTTGCTGTTAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAATTTTTGAAGGGGTTGAACATTTTGACCTCACTGAGGAATGAGAATCTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGAAGAGGTGAATGCTTCCTGGTTTATGATTTTGTTTCTAATGGAAATCTGACGCGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTCCTTGAATGGTCTACTAGAGTTTCTATTGTAAAAGGAATTGCTAAAGGTATCGCATATTTGCATGCATACAAAGCAAACAAGCCTGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTCATTGATCAGCGGCACAACCCACTGCTTTCAGATTCAGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCCCTCAAAGGCAGTGCAGCAAAAGGTTACCTAGCTCCAGAATACACCACCACCGGCCGGTTCACAGAGAAAAGTGATGTCTATGCTTTTGGGGTGCTTCTCTTCCAAATCCTCACAGGGAAGCAGAAGATCACCAGCTCAATGCGCCAAGCTGCAGAATCCTTCAGATTCCAAGAATTCATAGACTCGAATCTCCATGAAAGGTTCTTCGAATACGAGGCAGCTAAACTAGCAAGAATGGCTCTACTTTGCTCCCATGACTCTCCCTTTGAGAGGCCAACCATGGAAGCCATTGTTCAGGAACTAAACAATTGTAGTAGCTGTCTGTGA 2019 0.4284 MGRSVLVFLIFSLLGFVLNPTCVCGNDELRALLDLKATLDPDGQFLSSWTMNGNPCSGSFEGVACNEKGQVANVSLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGEIPREIANLTELSDLYLNVNHLSGEIPHEIGKMENLQGSIPTQLGDLKKLSVLALQSNQLAGAIPASLGDLGMLMRLDLSSNHLFGSIPTRLADVPSLQVLDVHNNTLSGNVPPALKRLDEGFVYEYNLGLCGVGFSSLKACNASDHVNPNRPEPYGAGVTGLSRDIPETANIKLPCNTTQCQNSSKSKRATSITVGTIVVTIALSAIAILTFTMYRRRKQKLGSAFDITESRLSTDQTKGIYRKNGSPLVSLEYANGWDPLADSRNFNGDRQDMFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSVVAVKSISKTSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLVYDFVSNGNLTRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAYKANKPALVHQNISAEKVLIDQRHNPLLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILTGKQKITSSMRQAAESFRFQEFIDSNLHERFFEYEAAKLARMALLCSHDSPFERPTMEAIVQELNNCSSCL 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi49g00043 672 FunFam Protein NSP-INTERACTING KINASE 2 371 478 - -
Sebi49g00043 672 Gene3D Transferase(Phosphotransferase) domain 1 479 671 - -
Sebi49g00043 672 ProSiteProfiles Protein kinase domain profile. 400 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi49g00043 672 Gene3D Ribonuclease Inhibitor 25 142 IPR032675 -
Sebi49g00043 672 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Sebi49g00043 672 Gene3D Phosphorylase Kinase; domain 1 371 478 - -
Sebi49g00043 672 FunFam Protein NSP-INTERACTING KINASE 2 25 164 - -
Sebi49g00043 672 Gene3D Ribonuclease Inhibitor 143 242 IPR032675 -
Sebi49g00043 672 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Sebi49g00043 672 SUPERFAMILY L domain-like 22 224 - -
Sebi49g00043 672 PANTHER LEUCINE RICH REPEAT KINASE 2 55 144 - -
Sebi49g00043 672 FunFam Protein NSP-INTERACTING KINASE 2 479 669 - -
Sebi49g00043 672 SUPERFAMILY Protein kinase-like (PK-like) 378 666 IPR011009 -
Sebi49g00043 672 Pfam Protein tyrosine and serine/threonine kinase 404 665 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi49g00043 Sebi-Chr49 518821 522311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi49g00043 16 513 Miscellaneous Gene Families AT4G22730 55.598 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Sebi49g00043 PK_Tyr_Ser-Thr 7.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi49g00043 - - gmx:100789253 1182.16