Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi49g00001 ATGGCTTCCTTAACCTCTCTTATCCTTACACTTGTCTTTCTTCATGTTTTCTTAGCTTTTGCAAACGTTAACCTCAGTTCAACACTCTCCACTAATGACAACCATGCATGGCTTTCACCTTCAGCTGAATTTGCTTTTGGATTTCGCCAACTTAGTGGCACAAGCCACTTCATTGTTGCCATCTGGTTTGACACAATACCAAACAAGACCATCGTTTGGAATGCCAAAGCAAATGATGACATTGCAGAAGCACCAACTGGATCACAGGTTCACCTCACATCAGAAGGGCTAATACTGACAAGTCCTGAAAATGTGACTATATGGATGGCACAACCACAACCAGGTGATGTTGTTTCCTTTGGAGCTATGCTTGACACTGGGAACTTTATTCTTGCAAATAGGGAATATAATTTTGTGTGGGAAAGTTTCAAGTATCCCACTGACACTTTGCTCCCTAACCAAACTCTAGAGGAAAATGGCAAGCTAACTTCTAGAATGACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAAGATGGTAGTGTCTTCCTTTGTTCCCTTGGTTGGCCTTCTCAACTTCGTTATGATCCTTATTATGCATTTGGTGCCTCTGGCTCTAGATCAAAATTAGTGTTCAATAATTCAGGGGATATTTACATAGAGAGAACGGATGGTACTAGAGTCCAACCTCATGGTGCAAAATGGGATACTAATGTAACTCTTGATCCTAAGGTGTATTACTATAGGGCAACAGTTGACTTCCATGGAGTTTTCACACAGTATTCTCATCCAAGGGGCTCCACTTCCCAACCAGGTTGGGAAATTGTGAGTTACTGCTTCATGAAAAGTGACAGGCCAACATGTGAATGCCCATATGGGTATTCACTAGTAGATCCAAGTAATGAATTTGGTGGGTGCCAACCCAAATTTACCCTTGGTTGTGGAGCTGATATGGAAGGATTGCAAGGAAGGCCAGAAGAACTATATGAATTGCATGAAACAAGTGATGGGGATTTTTATTTTGCAGAATATGACATAATACAACCTTACTCTCTAAGTGAATGCAAACAATCTTGCTTGCAAGATTGCATGTGTGCTGCTGTTTCCTTCTCTAATAATGGTTGTTACAAGAAAAGATTACCCCTTACTAATGGAAGATTAGCTACAATTCCACATTTGGTCTTTACCAAAATAAGAGTTCATCCTCTGACTAGTGCAAACAAGGGACTCCCTACTCTTCCTGACTCAAGGAAAGAAGATCAAGCTAAGCCAATTCTTATGGGGACACTTATTGGCTCCCTTGTCGTTAATAATATACTACTGGTTACTGTTGTTTTGGTGCTTCTCTTGAAGCCAAAAAGGATTGTCCAAGTTGCAAGTCTTTTGGAAACAAAATTGCATTCATTCACTTATGAAGTACTGAAAAATGCCACACAGGATTTTAGTGAAGAACTAGGGAGGGGTTCCTTTGGCATTGTTTACAAAGGTACTCTAGACTCAGTTTTGTCTCATAATGTAGTTGCTGTCAAGAGATTGGACAGACTATTAGTCTATGAGTTCATGAACAATGGTACTCTAGCAGACATCTTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCTATAATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGACCATTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGCTGTTGTTGTCTCACCAAAGTAGAACCAACACCATGATAAGAGGAATTAAAGGGTATGTGGCTCCTGAATGGTTCAAGAATGTGCCTGTGACAGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGCTGGAAATCATTTGCTGCAGAAGAAATGTGCTGCTGAAGGAGTCTGGGGAGGAAGAGAAGGCAATATTGACAGATTGGGCTTCTGATTGCTATATGGAAGGGAGAATAGATGCTCTTCTGGATGATGATGACAAAGGGTCTATGGATGACTATGACAAGTTACAAAG 2075 0.4043 MASLTSLILTLVFLHVFLAFANVNLSSTLSTNDNHAWLSPSAEFAFGFRQLSGTSHFIVAIWFDTIPNKTIVWNAKANDDIAEAPTGSQVHLTSEGLILTSPENVTIWMAQPQPGDVVSFGAMLDTGNFILANREYNFVWESFKYPTDTLLPNQTLEENGKLTSRMTETNYTRGRFQLYFQDGSVFLCSLGWPSQLRYDPYYAFGASGSRSKLVFNNSGDIYIERTDGTRVQPHGAKWDTNVTLDPKVYYYRATVDFHGVFTQYSHPRGSTSQPGWEIVSYCFMKSDRPTCECPYGYSLVDPSNEFGGCQPKFTLGCGADMEGLQGRPEELYELHETSDGDFYFAEYDIIQPYSLSECKQSCLQDCMCAAVSFSNNGCYKKRLPLTNGRLATIPHLVFTKIRVHPLTSANKGLPTLPDSRKEDQAKPILMGTLIGSLVVNNILLVTVVLVLLLKPKRIVQVASLLETKLHSFTYEVLKNATQDFSEELGRGSFGIVYKGTLDSVLSHNVVAVKRLDRLLVYEFMNNGTLADILFGQPKPIWNLRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDDHFTAKISDFGLAKLLLSHQSRTNTMIRGIKGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRNVLLKESGEEEKAILTDWASDCYMEGRIDALLDDDDKGSMDDYDKLQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi49g00001 691 SUPERFAMILY Protein kinase-like (PK-like) 465 652 IPR011009 -
Sebi49g00001 691 Pfam D-mannose binding lectin 70 161 IPR001480 -
Sebi49g00001 691 Gene3D Transferase(Phosphotransferase) domain 1 527 690 - -
Sebi49g00001 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Sebi49g00001 691 ProSiteProfiles Protein kinase domain profile. 428 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi49g00001 691 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 188 IPR036426 -
Sebi49g00001 691 ProSitePatterns Protein kinases ATP-binding region signature. 488 513 IPR017441 GO:0005524
Sebi49g00001 691 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 28 516 - -
Sebi49g00001 691 Pfam Protein kinase domain 517 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi49g00001 691 Gene3D - 145 273 IPR036426 -
Sebi49g00001 691 Gene3D Phosphorylase Kinase; domain 1 449 526 - -
Sebi49g00001 691 SMART blect_4 28 146 IPR001480 -
Sebi49g00001 691 FunFam Putative receptor-like protein kinase 524 691 - -
Sebi49g00001 691 Pfam PAN-like domain 351 379 IPR003609 -
Sebi49g00001 691 SMART serkin_6 482 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi49g00001 691 Gene3D - 17 144 IPR036426 -
Sebi49g00001 691 ProSiteProfiles Bulb-type lectin domain profile. 22 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi49g00001 Sebi-Chr49 14740 17001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi49g00001 431 679 Receptor kinase-like Gene Family AT1G56120 38.435 3.17e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi49g00001 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi49g00001 - - gmx:100775269 849.351