Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi499g00039 ATGCGGAGGAACAGTCCAGGATACTACAGTCCTCCTCGGAGAGGATATGGAGGCAGAGGACCTAGTAGGAGGGGATACGGTGGAGGCAGGCGCAGGGAAAACAACAACGGAAGCCTTTTGGTTCGGAACATTCCCCTTGATTGCAGAGCCGAAGAGCTTCGTGTCCCCTTTGAGCGCTTTGGACCTGTTCGTGATGTCTACATACCAAAGGATTATTACTCTGGAGAACCCCGAGGCTTTGCATTTGTGCAGTTTGTGGATTCTTATGATGCCTCAGAGGCCCAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGACCAGAGGAGATGCGCCATAGGTCTAGAGTCAGAGGACCAGCGAGCTATGGGGGGCAAAGGTCTTCTTATTACGGGCGTTCCCGATCTCGTTCAATTACCAGATCACGCTCACCACCTTATCACTCCGGTTCTAGAAATCGATATCGCTCAAGGTCCTTTTCTCCTGCCCCAAGACGGCAAATGGACTACTCTGTTTCCCCTAGAAGGCAAGCAGAGCACCCTAGATCACCTAGAGGTCCTCCTGGAGAGCGAGATGATGATCATAAGCGCAGGTCATATTCTCCAGCTTATGGCAATGGTGGGGATCAGAATCAAAGCAATGGATATGCTGAGAAATCTATATACAAGTCTGATGATCGAGGCCAGTGGAAGTCATCCCTACATAGAGCATCAAGGTCACCAATTGGATCTAGATCAAGGTCTCCGGATATGTCACCCAGACGTGGAAGATGA 810 0.4951 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGRRRENNNGSLLVRNIPLDCRAEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRHRSRVRGPASYGGQRSSYYGRSRSRSITRSRSPPYHSGSRNRYRSRSFSPAPRRQMDYSVSPRRQAEHPRSPRGPPGERDDDHKRRSYSPAYGNGGDQNQSNGYAEKSIYKSDDRGQWKSSLHRASRSPIGSRSRSPDMSPRRGR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi499g00039 269 MobiDBLite consensus disorder prediction 216 231 - -
Sebi499g00039 269 MobiDBLite consensus disorder prediction 1 36 - -
Sebi499g00039 269 Gene3D - 28 149 IPR012677 -
Sebi499g00039 269 SMART rrm1_1 38 111 IPR000504 GO:0003723
Sebi499g00039 269 MobiDBLite consensus disorder prediction 139 178 - -
Sebi499g00039 269 MobiDBLite consensus disorder prediction 117 269 - -
Sebi499g00039 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Sebi499g00039 269 MobiDBLite consensus disorder prediction 184 212 - -
Sebi499g00039 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Sebi499g00039 269 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 30 171 - -
Sebi499g00039 269 SUPERFAMILY RNA-binding domain, RBD 34 144 IPR035979 GO:0003676
Sebi499g00039 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi499g00039 Sebi-Chr499 733043 735973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi499g00039 20 99 Eukaryotic Initiation Factors Gene Family AT3G11400 38.750 9.02e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi499g00039 K12900 - gmx:100804294 369.007