Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi499g00011 ATGTACATGATCGGCCACCGCCATGATCAGAATTCTCGTCCAAATCACCGGAGACATTGCATAAACTCAGGCGGTGGTGACCGTTCACCGTTCAATCCAATCATCATGCTTCGCTCATCAGAGGGAACAAGTCGCGATCGTGGTGGCTTTGAGCTTTTCTATGATGACGGTGTCGGTTTTGGCCTTAGGCCTTTGCCTCCAAGGATGTCAGAGATTCTTTTAGGATCTGGATTTGACAGAGTGATGCAACAAATTTCTAATGTTGAGAACAATGGAGGAGGAATTGGAAGACACGACCAACAACAACCTCCTCCAGCATCAAAAGTCATTGTTGATTCCTTGCCGATAATAAAGATTGATGAGGCCCACATCGCCACGGAATCACATTGTGCCATTTGCAAGGAGCCTTTTGAAATTGGAATCACCGCAAGAGAATTGCCTTGCAAACACATATACCACAATGAATGCATCCTCCCCTGGCTTGCAATTCGCAATTCCTGCCCTGTTTGTCGCCATGAATTGCCTTCAGAACCAAACAACAACACAAATGTAGCATCACCATTAGTTCAGAACCAACAAACAAGTGAGGTAGAGAATGTGGGGTTGACAATTTGGAGGTTACCAGGTGGTGGTTTTGCGGTGGGAAGGTTTTTAGGTGGAAGAAGAAGGGGAGATGGGAGGGAGGTTCCTGTTATTTACACAGAGGTAGATGGTGGATTTAACATTAATGGGGTTGAGCCAATTAGAAGGATTTCTTGGTCAGTTTCATCATCTAGAGGGAGAGGGAATGGTGGTGGGTTGAGAAGAATGTTTAGCAATATGTTTGGTTGTTTTAGAGGTGGTGGAGGAGTTAGGCCTCAACGCTCTATTTCTCCTATAGAATATTCTCAACCCATGAGCTTAAGAAGTAATAGTGTATCTCGTGCCAATGTGGATCCGTCTCCACGTTCTCGTAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGACCATGGTAA 999 0.4505 MYMIGHRHDQNSRPNHRRHCINSGGGDRSPFNPIIMLRSSEGTSRDRGGFELFYDDGVGFGLRPLPPRMSEILLGSGFDRVMQQISNVENNGGGIGRHDQQQPPPASKVIVDSLPIIKIDEAHIATESHCAICKEPFEIGITARELPCKHIYHNECILPWLAIRNSCPVCRHELPSEPNNNTNVASPLVQNQQTSEVENVGLTIWRLPGGGFAVGRFLGGRRRGDGREVPVIYTEVDGGFNINGVEPIRRISWSVSSSRGRGNGGGLRRMFSNMFGCFRGGGGVRPQRSISPIEYSQPMSLRSNSVSRANVDPSPRSRRTWSMDVNSGMRPW 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi499g00011 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Sebi499g00011 332 SMART ring_2 130 170 IPR001841 -
Sebi499g00011 332 MobiDBLite consensus disorder prediction 301 332 - -
Sebi499g00011 332 MobiDBLite consensus disorder prediction 1 33 - -
Sebi499g00011 332 FunFam E3 ubiquitin-protein ligase RING1-like 95 177 - -
Sebi499g00011 332 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Sebi499g00011 332 Pfam Ring finger domain 129 171 IPR001841 -
Sebi499g00011 332 MobiDBLite consensus disorder prediction 301 324 - -
Sebi499g00011 332 Pfam Protein of unknown function (DUF1117) 200 291 IPR010543 -
Sebi499g00011 332 SUPERFAMILY RING/U-box 110 179 - -
Sebi499g00011 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi499g00011 Sebi-Chr499 150983 151981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi499g00011 60 180 C3H Transcription Factor Family AT5G01980 38.017 1.27e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi499g00011 K11982 - gmx:100784364 347.821