Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi498g00027 ATGGACTTATGCGTTGCAGTAGCACAAGATTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAGATTCAAAACCTCATCCTTTCATTGATGAATTTATTACTACTCTTAAAGAGGGTGATGGAATTTGTTATACTCACCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAATGCTTCCCATTTCTTCCACAGAGCAATTAAGGCTTACAATACTGGAACTCGAAAGCGTCGAAAAATAAATGATCAGGATTTTGGTGATGTCCGCTGGCATAAGACTGGAAAGACTAAACCAGTAATCTTGAATGGGGTTCAAAGAGGCTGTAAAAAGATTATGGTTCTGTATATGAGCAATCCAAGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTTGGAACAGAAGAGGATGAAAAGGATGGGGAGTATGTCATCTCTAAAGTGTCTTACCAGCAGGCGCAAGTCAGATCGGGTGATAAAGATGACCAGGATGTTCCTGAAGCCACTGAAGCCACAATTGTGAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCTGAGCCTCCTTGTAATGAAATGCAGTATTCAGATCTTGACCTAGGACAAGAAACACATAACATTCCTCAGATGGATTGCATAAATGAAGTTGAAGCTGATTGTGAGGCACCTGCACAAAATGATCCATCTATGGTAGAAACTCAACATAATGAAGGGATAGATGATAAAGAAAACAATGCTGATGAAGGCCAAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGAAGCATTGTCCTTGTGTGATGATCTACTTCAAAGCCAGTCTCCCAATAGAGATGGGAAAGATGGAGAACATAAGAACCAACTTGGTCTTTCTGTTTATGCTCAACTAGGACCAGAGCATCTAAAGAAGGATATTGAAGAGTGCCAAAATCTTGTCCTTGACCCTGCAAATCTAGAGAATGATACGCCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGATAGCTTTATTTCCTGGGGTTATAGCAAGGCAGTAAACTAA 1134 0.4074 MDLCVAVAQDWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIDEFITTLKEGDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKINDQDFGDVRWHKTGKTKPVILNGVQRGCKKIMVLYMSNPRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVSYQQAQVRSGDKDDQDVPEATEATIVKVDPVTPKSVTPEPPCNEMQYSDLDLGQETHNIPQMDCINEVEADCEAPAQNDPSMVETQHNEGIDDKENNADEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGKDGEHKNQLGLSVYAQLGPEHLKKDIEECQNLVLDPANLENDTPSEFRLSQLEFGSQDSFISWGYSKAVN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi498g00027 377 SUPERFAMILY NAC domain 5 172 IPR036093 GO:0003677|GO:0006355
Sebi498g00027 377 Gene3D NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
Sebi498g00027 377 FunFam NAC domain-containing protein 8 23 176 - -
Sebi498g00027 377 MobiDBLite consensus disorder prediction 247 268 - -
Sebi498g00027 377 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Sebi498g00027 377 Pfam No apical meristem (NAM) protein 15 153 IPR003441 GO:0003677|GO:0006355
Sebi498g00027 377 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 337 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi498g00027 Sebi-Chr498 511076 514765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi498g00027 5 172 NAC Transcription Factor Family AT1G28470 62.130 1.06e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi498g00027 NAM 2.7e-21 No_clan