Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi498g00024 ATGGCCACTGTTGCAACAAGAGGAATTGGAGTAGGAGTGACAAAGCTCCAACCCCACAAACCCAAGCACAAGTCCTTGTTTCTTGGGCAGAGACTTAGAATTAGACCCTCTGATGAGGCACAAAGCTGTGCAAGACTCATCAGTGTCTCAAACCCAAAAGCCTTTCAAGTGTTTGCACTGGGGGCTGAATGGGTTGACTCAGTTCACAACCTTTTTCTGGGTGTTGGGGTAGGGCTTCCTTGCACTGTCATGGAGTGTGGGGACATAATCTACAGAAGCACTCTTCCCAAGTCCAATGGATTGACAATTACTGTCCCTGGTGTGATTTTGGCTTTGGGTGCTCTCTCTTACCTTTGGGCTACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTGGGGAAGAAATTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGTCACTGACCAACAACAACAAGTCCTCTTCAAAGGAAGGTGACCTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGAGTAAGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGTTCTTCAAAGAAAGCTGCTGAATACTGGCTCATATGGCGGTTTGAAGGGGGTGCCACCTTAGCGGATCTTTTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTGATTCTGGGTGAGGTCCAGGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATGAGGCAGCTGTTGTTTGCATTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTCTGAAGGGTCTCGGTCATTCAAAATCATTGATCTTGGAGCTGCTGCAGACCTGCGAGTTGGCATCAACTACATTCCTAAGGAGTTTCTTTTGGATCCAAG 1016 0.4439 MATVATRGIGVGVTKLQPHKPKHKSLFLGQRLRIRPSDEAQSCARLISVSNPKAFQVFALGAEWVDSVHNLFLGVGVGLPCTVMECGDIIYRSTLPKSNGLTITVPGVILALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLTNNNKSSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKAAEYWLIWRFEGGATLADLLQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRSFKIIDLGAAADLRVGINYIPKEFLLDP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi498g00024 338 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 49 338 - -
Sebi498g00024 338 Gene3D Phosphorylase Kinase; domain 1 136 232 - -
Sebi498g00024 338 SMART serkin_6 150 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi498g00024 338 Gene3D Transferase(Phosphotransferase) domain 1 261 338 - -
Sebi498g00024 338 ProSitePatterns Protein kinases ATP-binding region signature. 156 185 IPR017441 GO:0005524
Sebi498g00024 338 Pfam Protein kinase domain 151 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi498g00024 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Sebi498g00024 338 SUPERFAMILY Protein kinase-like (PK-like) 134 326 IPR011009 -
Sebi498g00024 338 ProSiteProfiles Protein kinase domain profile. 150 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi498g00024 Sebi-Chr498 475438 477618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi498g00024 145 329 EF-hand Containing Proteins AT4G36070 26.842 4.17e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Sebi498g00024 Pkinase 1.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi498g00024 - - gmx:100778588 585.874